<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02979

Description Uncharacterized protein
SequenceMIRSPDTLALPPPPPTFPPPSHTIFVALSESRKNKNVVTWALEKFAPEANVGFKLLHIHPRITSVPTPMGNTIPISEVRDDVVAAYRQEVLWQAEDVLKPYKKMFERRKVAVEVHVIESDTVAAAIAEVVTRNSIERLVIGGSSRSFFSRRADMCSAISALVPNFCTVYVVSKGKLSCVRPSDSDGNATIRDDGSERTDSSSGSSGPNSESTDGVSSALDSQSQSRALSLPVRRFQHVQAIGRQASVPMDTSSVGSDDTRCMSMDAEEAKDVSSINRSSTDTTSRWTPRLRDYEERKDAMSSSSSNREYGNAGGKFSWTGMVIDTTHSRASQQASNMSDNLTEHSYTDNQVNLSFEVEKLRAELRHVQEMYTAAQTETFDASRKLGELNQRRLEEAIKLEELKLKEYEARELAEKEKQNFEKAKRDAESMRERAEREIAQRREAERKAARDAKEKEKLEDTLGSPRLQYQHFTWEEIVAATSSFSEELKIGMGAYGSVYKCNMHHTTAAVKVLHSAENGLSKQFQQELEILSKIRHPHLVLLLGACPEQGALVYEYMENGSLDDRLFQVNNSPPLPWFERVRIAWEVAAALVFLHKSKPKPIIHRDLKPANILLDHNFVSKVGDVGLSTMVQVDPLSTKFTIYKQTSPVGTLSYMDPEYQRTGMISSKSDVYSFGMIVLQLLTAKPPMALTHLVESSMDSNDEFLKILDQKAGNWPVEETRELTSLALCCTELRGKDRPDLRDQILPALESLKKVAEKARNSISSVPTQPPFHFLCPLLKDVMNEPCVAADGYTYDRLAIEEWFEEHNTSPMTDSPLLSKNLLPNYTLYTAIMEWRSRLK
Length840
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.499
Instability index47.86
Isoelectric point6.01
Molecular weight94326.59
Publications
PubMed=24916971

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02979
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.81|      19|      19|     182|     200|       1
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  182-  200 (33.81/19.06)	SDSDGNATIRDDG.SERTDS
  202-  221 (29.00/15.39)	SGSSGPNSESTDGvSSALDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.72|      28|      29|     265|     292|       2
---------------------------------------------------------------------------
  236-  260 (17.99/ 7.47)	.....QHVQAIGRQASvpmDTSSV..GSDDTR.
  265-  292 (48.29/33.43)	DAEEAKDVSSINRSST...DTTSR..WTPRLRD
  298-  324 (37.45/24.15)	DAMSS...SSSNREYG...NAGGKfsWTGMVID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.32|      23|      23|     405|     427|       3
---------------------------------------------------------------------------
  379-  406 (19.93/ 8.70)	FDAsRKLGELNQRRLEEAiKLEElklKE
  407-  432 (32.49/18.35)	YEA.RELAEKEKQNFEKA.KRDAesmRE
  433-  456 (27.90/14.82)	RAE.REIAQR.REAERKA.ARDA.keKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     186.56|      56|     749|      15|      74|       4
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   15-   74 (87.25/77.52)	PTfPPPSHTIFVALSESRKNKNVVT..WALEKFAPEAnvGFKLLHIHPrITSVPTPMGNTIP
  767-  824 (99.32/70.27)	PT.QPPFHFLCPLLKDVMNEPCVAAdgYTYDRLAIEE..WFEEHNTSP.MTDSPLLSKNLLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.48|      13|      14|     325|     338|       6
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  325-  338 (18.28/14.73)	TTHSrASQQASNMS
  342-  354 (23.19/13.54)	TEHS.YTDNQVNLS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02979 with Med32 domain of Kingdom Viridiplantae
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