<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02976

Description Uncharacterized protein
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRIEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDASVQSDMKLWPFKIIPGPADKPMIVVSYKGEEKQFAAEEISSMVLIKMREIAEAYLGVTIKNDVVTVPAYFNDSQRQATKDAGVIAGLNATSVGEKNVLIFDLGGGTFDVSLLTIEESIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKSKSKKDINGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFKGIDFYSALTRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEDVAYGAAVQGAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTTLIQRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNNKGRFSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIRDDKIGEKLPAADKKKIEDSVEEAIQLLDGNQTAEADEFEDKMKELESVCNPIIAKMYQGAGGEAGGSAGMDDDEAPPSTGGAGPKIEEVD
Length632
PositionUnknown
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.456
Instability index35.70
Isoelectric point5.07
Molecular weight69340.60
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02976
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.71|      25|      41|     493|     517|       1
---------------------------------------------------------------------------
  493-  517 (41.90/27.10)	NNKGRFSKDEIEKMVQEAEKYKSED
  536-  560 (41.80/27.01)	NMRNTIRDDKIGEKLPAADKKKIED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.09|      20|     172|     423|     462|       2
---------------------------------------------------------------------------
  423-  443 (28.81/44.49)	QPGVLiQVYEGERARTKDNNL
  470-  489 (31.28/ 7.19)	ANGIL.NVSAEDKTTGQKNKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.96|      18|      41|     319|     338|       5
---------------------------------------------------------------------------
  319-  338 (25.62/23.56)	VHDVVLVGGSTRipKVQQLL
  363-  380 (30.34/19.68)	VQGAILSGEGNE..KVQDLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      29.88|      10|     171|      67|      84|       7
---------------------------------------------------------------------------
   47-   57 (15.63/ 6.18)	FtDSERLIG....DA
   71-   84 (14.25/12.62)	F.DAKRLIGrrfsDA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02976 with Med37 domain of Kingdom Viridiplantae
Unable to open file!