<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02972

Description CMGC/CDK/CDK8 protein kinase
SequenceMPLRPHIGLGFPAHAYQKRHVEPHDRSTGYQPKVRITDRYRIIGFISSGTYGRVYKAVGRNGKPVGEFAIKKFKPDKEGEQISYTGISQSAIREMSLCSELHHINVIRLCEIMLEDKCIFMVFEYAEHDLLQIIHHHTQQPRHPIPPATIKSIMFQLLNGCQYLHINWVLHRDLKPANIMVTSSGEVKIGDLGLARRFDKPLHSLFSGDKVVVTIWYRAPELILGSYHYTPAIDMWAVGCIFAELLSLRPIFKGEEAKMDSKKTVPFQRNQMQKIIEIMGVPTKDKWPLLPTMPEYNQLNTLANSMASSHHGHHSHHHPHHHHGHYGSRNPPPPPPGGSNLEKWYYSTINHTSAPGGTPPLASLGSEGYKLLAGLLEYDPSKRLTAAQALQSPFFSTGDRVSANCFEGCKNEYPCRRVSQDDNDIRTSSLPGTKRSGLPDDSLIRPAKRQKE
Length452
PositionKinase
OrganismFusarium oxysporum f. sp. lycopersici (strain 4287 / CBS 123668 / FGSC 9935 / NRRL 34936) (Fusarium vascular wilt of tomato)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Nectriaceae> Fusarium> Fusarium oxysporum species complex.
Aromaticity0.08
Grand average of hydropathy-0.499
Instability index45.69
Isoelectric point9.19
Molecular weight51042.91
Publications
PubMed=20237561

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02972
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     342.22|     111|     175|      18|     144|       1
---------------------------------------------------------------------------
   18-  144 (166.74/141.47)	KRHVEP.HDRSTGyqPKVRITDRYRIIGFIsSGTYgRVYKAVgrNGKPVGE.FA.IKKFKPDKEGEQISYTgiSQSAI....REMslcselHHInvIRLCEIMLEDKCIFM..VFEYAEHDLL....QIIHHHTQQPRHP
  196-  319 (175.48/105.32)	RRFDKPlHSLFSG..DKVVVTIWYRAPELI.LGSY.HYTPAI..DMWAVGCiFAeLLSLRPIFKGEEAKMD..SKKTVpfqrNQM......QKI..IEIMGVPTKDKWPLLptMPEYNQLNTLansmASSHHGHHSHHHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.01|      25|      48|     330|     354|       2
---------------------------------------------------------------------------
  330-  354 (49.19/32.17)	NPPPPPPGGSNLEKWYYSTINHTSA
  379-  403 (41.82/26.22)	DPSKRLTAAQALQSPFFSTGDRVSA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02972 with CDK8 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RRVSQDDNDIRTSSLPGTKRSGLPDDSLIRPAKRQKE
2) TLANSMASSHHGHHSHHHPHHHHGHYGSRNPPPPPPGGSNLEKWYYSTI
416
301
452
349










Molecular Recognition Features






MoRF SequenceStartStop




1) LIRPAKR
443
449