<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02955

Description Uncharacterized protein
SequenceMVVFYHNKLQHPSIEIQTQNLYIETTENAHALFIIQSLFCWCLLQASLETCLYCSQMRDETIVYDVAWSALQPQLLHASLQPVHSISTPTTGSSGSAGSRRPDARQLRQELTAQPAYQCIDWSARNLIAFATCSRVLPLATTLQSVAGTGAGASLPTGSAGVAGGPPASMNTVTAGPSSAANQANPNPTQSTSSAAGTAPSVQEASGEMRLHTIHIMDPNTPWAMCSLAQEHHTRPIKTLKWSGSGFQLISIDDGGTLCLWRMRSHLANEWYCEHTQSYGTDESVVAAVWLENGLVHKPPTVVDDMSDASLARSYSEKFSHSFSTVPLGAPSTSWLLLTSSGKVPCCSSLLPSFSLCIPMQMLTFSPPPTFRSLDEPTAFAAIPNITHQLVQFQHEHCAFATAILL
Length406
PositionTail
OrganismCapsaspora owczarzaki (strain ATCC 30864)
KingdomIchthyosporea
LineageEukaryota> Filasterea> Capsaspora.
Aromaticity0.07
Grand average of hydropathy-0.034
Instability index48.90
Isoelectric point5.93
Molecular weight43815.15
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02955
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     126.61|      29|      30|     141|     169|       1
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   80-  105 (27.62/10.75)	..LQPVHSI....STPtTGSSGSAGSrrPDAR
  141-  169 (52.28/26.48)	TTLQSVAGTGAGASLP.TGSAGVAGG..PPAS
  174-  201 (46.72/22.93)	TAGPSSAANQANPN.P.TQSTSSAAG..TAPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.02|      25|      36|     206|     238|       2
---------------------------------------------------------------------------
  206-  231 (46.15/45.49)	SGEmRLHTIHIMDPNT..PWAMCS.LAQE
  243-  270 (37.87/17.36)	SGS.GFQLISIDDGGTlcLWRMRShLANE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02955 with Med16 domain of Kingdom Ichthyosporea
Unable to open file!