<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02950

Description Uncharacterized protein
SequenceMELLNPAHRDPIPGPSFRPRVDRPANTQFPESAEETGGFNAGEKDKVFIAVGKSVEKAVNLLQWTLKRFGGKHICLLHVHQPSPLIPTLLGKLPASQANSRVLSAYRKDEKEQLKKLLENYSNFPRKFKVHISIITIEANQVHKGIVELVKRHGIRNLVMGAIPENCMRMKKSSSKSSYAAKYVPCFCDIWFVDKGKLVWMREACEKPCLSTPVSQAAVTAKSSRSNSLPHRNIDSLVHPDDLRSNSCLSITFAASSTRLTESIVAQTDVSLSPRLSSFSNLSIPSFTNGSERASSEMRLSLDSYSKDEDENLYRQLGEACMEAKASKNEALAESLKRQKLESEAMEAINKIKDLESARVHEVKLREKAEESLRATVQEREKLIKEKEEAMEELQRTTRNITLLNDCVQEANCKHDEVAGKLKLIQVSIVTLREEKQRIRRQKLEAVRWLERWRSRGQAGATTCNGFIGIVEDLPELAEFSLADVQTATCNFSESFKIGKGGHGCVYKGEMLGRTVAIKKLYPHNMQGQSEFQQEAQVLSKLQHPHLVTLLGVCPEAWSLVYEYVPNGSLQDRLFRKTSVSPLTWKIRARIVAEISSALCFLHSAKPEKIVHGDLKPENILLDSELSCKICDFGISRLVTEDNLYCPSFHCSTEPKGAFPYSDPEFRRIGVPTPKSDIYAFGLVILQMLTRRPPVGLAGEVRKAISSGKLASILDKSAGEWPMFVARRLVDLGLQCCESYSRDRPDLKPSLVRELGQLHVTEERPVPSFFLCPILQEIMHDPQVAADGFTYEGEALRGWLQNGRETSPMTNLKLSHLHLTPNHAIRQAIQNWLCKA
Length836
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.374
Instability index44.89
Isoelectric point8.79
Molecular weight93843.81
Publications
PubMed=23257886

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02950
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     504.50|     159|     361|     123|     292|       1
---------------------------------------------------------------------------
  123-  222 (141.45/94.79)	............................................................................................................................................................................................................................................................................NFPRKFKVHISIITIEANQVHKGIV..ELVKRH.GIRNLVMGAIPENCMRMKKSSSKSSYAAKYVPCF...C.DIW.....FVDKGKL..V...WMREACE.KPCLSTPVSQAAVTAK
  223-  292 (35.92/49.23)	SSRSNSLPHRNIDSLVHpDDLRSNSCLsitfaaSSTRLTESIvaqTDVSLSpRLSSFSNLSIPSFTNGSE............................................................................................................................................................................................................................................................................................................................
  491-  594 (97.59/61.66)	......................................................................rassemrlsldsyskdedenlyrqlgeacmeakasknealaeslkrqkleseameainkikdlesarvhevklrekaeeslratvqereklikekeeameelqrttrnitllndcvqeanckhdevagklkliqvsivtlreekqrirrqkleavrwlerwrsrgqagattcngfigivedlpelaefsladvqtatcNFSESFKIGKG....GHGCVYKG....EMLGRTvAIKKLYPHNMQGQSEFQQEAQVLSKLQHPHLVTLlgvCpEAWslvyeYVPNGSLqdR...LFRKTSV.SP.LTWKI.RARIVAE
  596-  761 (229.54/164.66)	SSALCFLHSAKPEKIVH.GDLKPENIL......LDSELSCKI...CDFGIS.RLVTEDNLYCPSFHCSTE..............................................................................................................................................................................................pkgafpysD.P.EFR.RIGVPTPKSDIYAFGLVilQMLTRR.PPVGLA.GEVRKAISSGKLASILDKSAGEW.PMF...V.ARR.....LVDLGLQ..CcesYSRDRPDlKPSLVRELGQLHVT..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.70|      45|     749|      13|      61|       2
---------------------------------------------------------------------------
   13-   61 (68.74/63.93)	PGPSFR..PRVDRPANTqfPESAEEtgGFN.AGEKDKVFIAVGKSVEKAVNL
  765-  812 (73.96/53.54)	PVPSFFlcPILQEIMHD..PQVAAD..GFTyEGEALRGWLQNGRETSPMTNL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02950 with Med32 domain of Kingdom Viridiplantae
Unable to open file!