<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02949

Description Uncharacterized protein
SequenceMAAKNKAFWVLFLFISEFLLGIAVASNDSKVGAVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAALNAERTIFDVKRLIGRKFNDPEVQRDVKFLPYKVVNKDGKPYIQVKVKGETKVFSAEEISAMVLTKMKETAEAYLGKKIKDAVITVPAYFNDAQRQATKDAGTIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVYDLGGGTFDVSILTIDNGVFEVLSTSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKALGKLRRECERAKRALSSQHQVRVEVESLFDGVDFSEPLTRARFEELNMDLFKKTLGPVKKALEDANLKKFDINEIVLVGGSTRIPKVQQLLKDLFDGKEPNKGINPDEAIAYGAAVQGGILSGEGGEETKDILLLDVAPLSLGVETVGGVMTKLIPRNTVIPTKKSQVFTTYEDQQSTVSIKVYEGERSLTKDCRELGRFDLTGIPPAPRGVPQIEVTFEVDANGILHVTAEDKAAKKAQSITITNDKGRLSQEEIERMVKEAEEFAEEDKKVREKIDSRNKLETYIYNMRSSIDDKDKLADKIDSDEKEKIENTLREALEWLDDNQNGEKEDFDEKLKEVEAVCNPIIKQVYGKSGGSSANDDEPTDEL
Length656
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.431
Instability index29.05
Isoelectric point5.22
Molecular weight72653.59
Publications
PubMed=23257886
PubMed=30476109

Function

Annotated function 
GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02949
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.09|      25|      26|     558|     582|       1
---------------------------------------------------------------------------
  558-  582 (42.26/24.16)	KVREKIDS..RNKLETYIYNMRSSIDD
  585-  611 (35.82/19.52)	KLADKIDSdeKEKIENTLREALEWLDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.06|      16|      16|     181|     196|       2
---------------------------------------------------------------------------
  181-  196 (27.61/20.73)	AQRQATKDAGTIA.GLN
  198-  214 (20.45/13.25)	ARIINEPTAAAIAyGLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.61|      26|      27|     382|     407|       8
---------------------------------------------------------------------------
  382-  407 (45.77/31.45)	DGKEPNKGI.NPDEA.IAYGAAVQGGIL
  410-  437 (32.84/20.39)	EGGEETKDIlLLDVApLSLGVETVGGVM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.97|      21|      26|     484|     504|      14
---------------------------------------------------------------------------
  484-  504 (37.03/27.39)	GRFDLTGIPPAPRGVPQIEVT
  511-  531 (29.81/20.50)	GILHVTAEDKAAKKAQSITIT
  535-  550 (19.13/10.30)	GRLSQEEI...ERMVKEAE..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.75|      18|      19|     136|     153|      15
---------------------------------------------------------------------------
  136-  153 (27.47/15.02)	KGETKVFSAEEISAMVLT
  156-  173 (27.28/14.87)	KETAEAYLGKKIKDAVIT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02949 with Med37 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




1) EALEWLD
2) EPTDEL
3) KEDFDEKLKEVEAVCNPIIKQVYGKSG
604
651
617
610
656
643