<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02949

Description Uncharacterized protein
SequenceMAAKNKAFWVLFLFISEFLLGIAVASNDSKVGAVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAALNAERTIFDVKRLIGRKFNDPEVQRDVKFLPYKVVNKDGKPYIQVKVKGETKVFSAEEISAMVLTKMKETAEAYLGKKIKDAVITVPAYFNDAQRQATKDAGTIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVYDLGGGTFDVSILTIDNGVFEVLSTSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKALGKLRRECERAKRALSSQHQVRVEVESLFDGVDFSEPLTRARFEELNMDLFKKTLGPVKKALEDANLKKFDINEIVLVGGSTRIPKVQQLLKDLFDGKEPNKGINPDEAIAYGAAVQGGILSGEGGEETKDILLLDVAPLSLGVETVGGVMTKLIPRNTVIPTKKSQVFTTYEDQQSTVSIKVYEGERSLTKDCRELGRFDLTGIPPAPRGVPQIEVTFEVDANGILHVTAEDKAAKKAQSITITNDKGRLSQEEIERMVKEAEEFAEEDKKVREKIDSRNKLETYIYNMRSSIDDKDKLADKIDSDEKEKIENTLREALEWLDDNQNGEKEDFDEKLKEVEAVCNPIIKQVYGKSGGSSANDDEPTDEL
Length656
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.431
Instability index29.05
Isoelectric point5.22
Molecular weight72653.59
Publications
PubMed=23257886
PubMed=30476109

Function

Annotated function 
GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02949
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.09|      25|      26|     558|     582|       1
---------------------------------------------------------------------------
  558-  582 (42.26/24.16)	KVREKIDS..RNKLETYIYNMRSSIDD
  585-  611 (35.82/19.52)	KLADKIDSdeKEKIENTLREALEWLDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.06|      16|      16|     181|     196|       2
---------------------------------------------------------------------------
  181-  196 (27.61/20.73)	AQRQATKDAGTIA.GLN
  198-  214 (20.45/13.25)	ARIINEPTAAAIAyGLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.61|      26|      27|     382|     407|       8
---------------------------------------------------------------------------
  382-  407 (45.77/31.45)	DGKEPNKGI.NPDEA.IAYGAAVQGGIL
  410-  437 (32.84/20.39)	EGGEETKDIlLLDVApLSLGVETVGGVM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.97|      21|      26|     484|     504|      14
---------------------------------------------------------------------------
  484-  504 (37.03/27.39)	GRFDLTGIPPAPRGVPQIEVT
  511-  531 (29.81/20.50)	GILHVTAEDKAAKKAQSITIT
  535-  550 (19.13/10.30)	GRLSQEEI...ERMVKEAE..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.75|      18|      19|     136|     153|      15
---------------------------------------------------------------------------
  136-  153 (27.47/15.02)	KGETKVFSAEEISAMVLT
  156-  173 (27.28/14.87)	KETAEAYLGKKIKDAVIT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02949 with Med37 domain of Kingdom Viridiplantae
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