<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02948

Description Uncharacterized protein
SequenceMAEKQLIVAVEGTAAMGPYWHIVVSDYLDKIIRCFCSSELTGQKNSTSNVEFSLVTFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMFPIASNGNQTPQNVDGQRHCILVAASNPYPLPTPVYRPQIQNLEQVENSEAQTESCLSDAETVARSFAQCSVSLSVICPKQLAKLKAIYSAGKRNPRAADPPVDNVKNSQFLVLISENFMEGRAALSRSGVPSLATNQSPVKMDMASVTSVMGPSPSSVNGSMVGKLPVSVGNVATATVKVEPTTITSMATGPAFSHVPSVPRVPSQAIPTLQTSSPLTNTQEGMTSGDNMQELKPSVSGMTQPSRPVPPAAANVNILNNLSQARVMSSAALTGGTSIGLQSMGQTPVAMHMSNMISSGMASSVPPAHTVLSSGQPTMTSLTGSGALTGTAQVPPNSGLSTFSSASSNVAGNSNIGISQPTGNVQGAVNIGQSVPGMSQGNHSGTQMMQSGVGMSQNMSALGQSTVSSGNGTMIPTPGMSQQVQSGMQTLGVSNSSAASMPLSQQTSSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPQQTLLLSVSDKACRLIGMLFPGVRMF
Length683
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.05
Grand average of hydropathy-0.085
Instability index49.97
Isoelectric point8.61
Molecular weight71665.68
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02948
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     248.18|      51|      53|     469|     520|       1
---------------------------------------------------------------------------
  339-  410 (46.18/14.26)	...NMQ...ELKPSVSGMT....QPsrpvppaaanvnilnNLSQARVMSSAAltgGTS.........IGLQSM..GQT...PVamhmsnmiSSGMA
  414-  462 (67.01/23.53)	PPAHT..VLSSGQ..PTMTsltgSG...............ALTGTAQVPPNS...GLS.........TFSSAS....S...NV.........AGNS
  469-  520 (92.24/37.70)	PTGNVQgAVNIGQSVPGMS....QG...............NHSGTQMMQSGV...GMS.........QNMSAL..GQS...TV........SSGNG
  524-  573 (42.75/12.73)	PT.............PGMS....QQ...............VQSGMQTL..GV...SNSsaasmplsqQTSSALqsAQSkyvKV........WEGN.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.14|      33|      36|     250|     285|       2
---------------------------------------------------------------------------
  235-  277 (39.45/28.13)	LSrsgVPSLATnqspVKMDMASVTSvM..GPSPSSVNGsmVGKLP
  278-  314 (50.69/25.69)	VS...VGNVAT..atVKVEPTTITS.MatGPAFSHVPS..VPRVP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02948 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSRSGVPSLATNQSPVKMDMASVTSVMGPSPSSVNGSMVG
2) LTGGTSIGLQSMGQTPVAMHMSNMISSGMASSVPPAHTVLSSGQPTMTSLTGSGALTGTAQVPPNSGLSTFSSA
3) TITSMATGPAFSHVPSVPRVPSQAIPTLQTSSPLTNTQEGMTSGDNMQELKPSVSGMTQPSRPVPPAAANVNILN
4) VAGNSNIGISQPTGNVQGAVNIGQSVPGMSQGNHSGTQMMQSGVGMSQNMSALGQSTVSSGNGTMIPTPGMSQQVQSGMQTLGVSNSSAASMPLSQQT
235
381
294
458
274
454
368
555










Molecular Recognition Features






MoRF SequenceStartStop




NANANA