<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02947

Description Uncharacterized protein
SequenceMPDQSNSVESQKCYDKLPNVNWLQHFDAHDKFACQKKFLCTNFLFSLEGQKPQGTMFARLTSRQIQNSQIFQHTQVEKAWQILSSLPASCRTYLKPGTSAPVKTSTDEISHNRRGRSTLVEPSGMKRSEHMLVHPNSSETDGKVNGFGRCMTSSFPSNNANTMESGNNLRGNSGITTSMFSHSNSKVSGGSLKNQTFHGVQQEQSAEVLANEIDDDDLLKDIDVDQIVSEHYQSTCTPQPSVSKFPPITPSVDKNAFAGQETCLPPELCSNCSHGCKLGHCPEAASHVQEMKDMLIAVSNELLDNATNLSPEQIEKLRQDRLLLNKQIQLLEKYISDVERQKSNFSASTATLSFQYGTPQTTSLRPNLIQFDTQVHSRNEPNGYDNWNSPTVPFSSVNSFGVPSGPIEREPYIPQIIDVNYIEGSNDQKWSSRDFPWTRKLEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMDWSEQQEILRELTSDYCKYKLLYVTPEKVARSDVLLRHLNILNSRDLLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPKTPVLALTATATASVKEDVVQALGLINCIIFRQSFNRPNLWYSVIPKTKKCVEDIDKFIKENHFDECGIIYCLSRMDCEKVAEKLQEYGHKAAFYHGNMDPAQRAFIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCLLYYSYSDYIRVKHMISQGAAEQSPLITGHSRFNNSGRILETNTENLLRMVSYCENDVDCRRLLQLLHFGEKFDSTHCQKTCDNCCKTSCSVDKDVTNIAKQLVELVKLTGQQFSSSHILEVYRGSLSQFVKKHRHETLSLHGVGKHLAKGEASRIIHHLVVEEYLLEDVKKSDIYGSVSSVLKVNESKVKNLFSGRQAIIIRFPSTVKVGKLSKPEVTPAKGSLTTSGKLSPPRVDTPAQFQSIVDLNLSAKLYSALRMLRTILVKEAGEGVMAYHIFGNATLQHISKRVPRTKEELLEINGIGKAKILKYGDRLLETIEATIKEHYKTDKINSGSSNDSNDSAKRRRNTNANIDNDDDFSRSTGRSKRRTVERQDKDGNGDNNHQYPADENDLDFDDLDYVYDVESKENRPQVEVNINGRMLPSWPRT
Length1203
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.533
Instability index46.87
Isoelectric point7.84
Molecular weight135387.44
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
plasmodesma	GO:0009506	IEA:EnsemblPlants

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:EnsemblPlants
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
cellular response to abscisic acid stimulus	GO:0071215	IEA:EnsemblPlants
cellular response to cold	GO:0070417	IEA:EnsemblPlants
DNA replication	GO:0006260	IEA:InterPro
double-strand break repair via homologous recombination	GO:0000724	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02947
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     218.38|      70|     157|     879|     954|       1
---------------------------------------------------------------------------
  879-  954 (111.36/120.32)	LVKLTGQQFSSSHIL.EVYRGSLSQFVKKHRHETLSLHGVGKHLAKGEASRIIHHL...VVEEYlledvkKSDIYGSVSS
 1038- 1111 (107.02/99.37)	LVKEAGEGVMAYHIFgNATLQHISKRVPRTKEELLEINGIGKAKILKYGDRLLETIeatIKEHY......KTDKINSGSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     232.25|      72|     156|     183|     260|       2
---------------------------------------------------------------------------
  183-  260 (106.00/79.26)	SNSKVSGGSLKNQtfHGVQQEQSaeVLANEIDDDDLLKDIDvDQIVSEHYQSTCTPQPSVSKFP.PITPsVDKNAFAGQ
  343-  415 (126.25/73.80)	SNFSASTATLSFQ..YGTPQTTS..LRPNLIQFDTQVHSRN.EPNGYDNWNSPTVPFSSVNSFGvPSGP.IEREPYIPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.19|      23|     156|     488|     550|       3
---------------------------------------------------------------------------
  520-  542 (39.76/82.15)	AAYLSANMDWSEQQEILRELTSD
  700-  722 (43.44/ 7.50)	AAFYHGNMDPAQRAFIQKQWSKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.17|      15|     134|     442|     457|       5
---------------------------------------------------------------------------
  442-  457 (24.58/17.50)	EANNKKVFGnHSFRPN
  582-  596 (32.59/18.82)	EAHCVSQWG.HDFRPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.64|      21|     144|     679|     699|       9
---------------------------------------------------------------------------
  679-  699 (38.14/24.34)	YCLSRMDCEKVAEKLQEYGHK
  826-  845 (36.56/23.03)	YCENDVDCRRLL.QLLHFGEK
  862-  878 (20.94/10.09)	SCSVDKDVTNIAKQLVE....
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02947 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APVKTSTDEISHNRRGRSTLVEPSGMKRSEHMLVHPNSSETDGKVNGFGRCMTSSFPSNNANTMESGNNLRGNSGITTSMFSHSNSKVSGGSLKNQTFHGVQQEQSAEVLANEIDD
2) DLDYVYDVESKENRPQVEVNINGRMLPSWPRT
3) HYKTDKINSGSSNDSNDSAKRRRNTNANIDNDDDFSRSTGRSKRRTVERQDKDGNGDNNHQYPADENDLDF
100
1172
1100
215
1203
1170










Molecular Recognition Features






MoRF SequenceStartStop




NANANA