<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02942

Description Uncharacterized protein
SequenceMAAKAEGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPAVQADMKHWPFRVVAGPGDKPMIVVNYKGEEKQFAPEEISSMVLVKMKEVAEAYMGQTVKNAVITVPAYFNDSQRQATKDAGSISGLNILRIINEPTAAAIAYGLDKKASRSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISTNARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVDEVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIERMVQEAERYKAEDEEVKKKVEAKNGLENYAYNMRNTVKDDKFAGKLDPAEKQKIEKAIDDTIEWLDGNQLAEVDEFEDKLKELEGICNPIIAKMYQGGAGGDVPMGGGAETPNGGGSGGSGAGPKIEEVD
Length652
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.429
Instability index34.06
Isoelectric point5.15
Molecular weight71380.98
Publications
PubMed=23257886
PubMed=30476109

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02942
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.99|      19|      74|     448|     466|       1
---------------------------------------------------------------------------
  448-  466 (31.69/23.67)	VYEGERARTKDNNLLGKFE
  525-  543 (27.84/19.75)	VQEAERYKAEDEEVKKKVE
  552-  569 (28.46/20.39)	AYN.MRNTVKDDKFAGKLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.14|      21|     106|      40|      60|       4
---------------------------------------------------------------------------
   40-   60 (37.87/21.51)	TTPSYVAFTDTERLIGDAAKN
   64-   78 (21.79/ 9.88)	MNPQNTVF.DAKRLIG.....
  149-  164 (29.47/15.43)	TVPAY..FNDSQR...QATKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.08|      45|     189|     170|     218|       6
---------------------------------------------------------------------------
  170-  218 (62.76/53.11)	GLNILRIINePTaAAIAYGLDKKAS.RSGEKNVLIFDLggGTFDVSLLTI
  362-  407 (72.32/44.82)	GKELCKSIN.PD.EAVAYGAAVQAAiLSGEGNEKVQDL..LLLDVTPLSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02942 with Med37 domain of Kingdom Viridiplantae
Unable to open file!