<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02939

Description Uncharacterized protein
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRYSDSSVQSDMKLWPFKVIAGPGDKPMIVVTYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNSLENYAYNMRNTIKDEKIGSKLDPADKKKIEDAIDGAIQWLDGNQLAEADEFEDKMKELESICNPIIAKMYQGAGADMGGGMDEDAPPTGGSGAGPKIEEVD
Length648
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.412
Instability index33.72
Isoelectric point5.11
Molecular weight71009.71
Publications
PubMed=23257886
PubMed=30476109

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02939
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     224.79|      86|     188|     117|     225|       1
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   51-  101 (38.18/ 9.54)	ERLIGDAAKNQVAMNPinTVF.DAKRLIGRrysDSSVQSDMKLwpFKVIAGP..................................................
  136-  225 (129.84/110.76)	EAYLGATIKNAVVTVP..AYFnDSQRQATK...DAGVIAGLNV..MRIINEPTaAAIAYGLDKKATSV.GEKNVLIFDLggGTFDVSLLT..IEE..GIFEV
  362-  418 (56.77/24.46)	.......................................GKEL..CKSIN.PD.EAVAYGAAVQAAILsGEGNEKVQDL..LLLDVTPLSlgLETagGVMTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     351.73|     118|     289|     228|     354|       2
---------------------------------------------------------------------------
  228-  354 (176.86/117.90)	TAGDTHLGGEDFDnRMVNHfVQEFK...RKNKKDISG.........NPRalRRLRTacERAKRTLSSTAQTTIE..IDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMD..kssVHDVVLVGGSTRIPKVQQ
  510-  646 (174.87/93.64)	TNDKGRLSKEEIE.KMVQE.AEKYKsedEEHKKKVEAknslenyayNMR..NTIKD..EKIGSKLDPADKKKIEdaIDGAIQWLDGNQLAEADEFEDKMKELESICNPIIAKMYQGAGADmgggmDEDAPPTGGSGAGPKIEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.78|      34|      45|     427|     461|       3
---------------------------------------------------------------------------
  427-  461 (52.33/49.09)	PTKKEQVFSTYSDNQPGVLiQVYEGERARTRDNNL
  474-  507 (56.45/47.20)	PRGVPQITVCFDIDANGIL.NVSAEDKTTGQKNKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.35|      12|      21|      10|      21|       4
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   10-   21 (23.72/17.66)	IGIDLG..TTYSCV
   32-   45 (18.63/12.16)	IANDQGnrTTPSYV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02939 with Med37 domain of Kingdom Viridiplantae
Unable to open file!