<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02938

Description Uncharacterized protein
SequenceMAEKQLIVAVEGTAAMGPYWHIVVSDYLDKIIRCFCSSELTGQKNSTSNVEFSLVTFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMFPIASNGNQTPQNVDGQRHCILVAASNPYPLPTPVYRPQIQNLEQVENSEAQTESCLSDAETVARSFAQCSVSLSVICPKQLAKLKAIYSAGKRNPRAADPPVDNVKNSQFLVLISENFMEGRAALSRSGVPSLATNQSPVKMDMASVTSVMGPSPSSVNGSMVGKLPVSVGNVATATVKVEPTTITSMATGPAFSHVPSVPRVPSQAIPTLQTSSPLTNTQEGMTSGDNMQELKPSVSGMTQPSRPVPPAAANVNILNNLSQARVMSSAALTGGTSIGLQSMGQTPVAMHMSNMISSGMASSVPPAHTVLSSGQPTMTSLTGSGALTGTAQVPPNSGLSTFSSASSNVAGNSNIGISQPTGNVQGAVNIGQSVPGMSQGNHSGTQMMQSGVGMSQNMSALGQSTVSSGNGTMIPTPGMSQQVQSGMQTLGVSNSSAASMPLSQQTSSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPQQTLLLSVSDKACRLIGMLFPGLHSSNTPPGLHPSLDKPKKLNEMDMVVFKPQMSSQQQLQLQQQQQQQQMQPQLQQQQQQQNPQLQQQQLPHLQQQQQLPQLQQQQQQLPQLQQQQLSQLQQQQQQQQQQQQQLQQQSQHPQMQQQQMVGSGMGPAYVQGPGRSQLVSQGQVPSQAPPNMPGGGFMS
Length845
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.04
Grand average of hydropathy-0.349
Instability index63.95
Isoelectric point8.71
Molecular weight90170.00
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription, DNA-templated	GO:0045893	IEA:EnsemblPlants
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02938
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     257.47|      40|      40|     714|     753|       1
---------------------------------------------------------------------------
  605-  652 (41.19/10.76)	.P..QTMQI................VRLISQDHMNNKQyvgkadflvfrAMNQHGFLGQLQEKKLCA
  653-  700 (37.33/ 9.02)	VIQLPQQTLllsvsdkacrligmlfPGLHSS...................NTPPGLHPSLDKPKKLN
  701-  739 (66.83/22.34)	EMDMVVFK.................PQMSSQQQLQLQQ...........QQQQQQMQPQLQQQQQQQ
  740-  767 (56.47/17.66)	NPQLQQQQL................PHLQQ......................QQQL.PQLQQQQQQL
  768-  798 (55.65/17.29)	.PQLQQQQL................SQLQQQQQ...QQ...........QQQQQQL.....QQQSQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     304.52|      52|      53|     469|     520|       2
---------------------------------------------------------------------------
  244-  279 (40.39/10.31)	.........A.TN..........................Q....SPVK....MDMA..SVTSVM.GPS..PS.S.........VNGSMVGKL......PVS..........
  281-  352 (43.37/11.58)	....GNVATAtVKVepttitsmatgpafshvpsvprvpSQ....AIPT....LQ..TSSPLTNT.QEG..MTSG.........DNMQEL.KP......SVSG......MTQ
  358-  408 (45.19/12.36)	PpaAANVNIL.NNL........................SQarvmSSAA....LTGGTSIGLQSMgQTP..VAM...........HMSNM..........ISS......G..
  409-  462 (37.71/ 9.16)	.............M........................AS....SVPPahtvLSSGQPTMTSLT.GSGalTGTA.........QVPPNSGLS......TFSSassnvaGNS
  469-  520 (99.44/35.63)	P..TGNVQGA.VNI........................GQ....SVPG....MSQGNHSGTQMM.QSG..VGMS.........QNMSALGQS......TVSS......GNG
  524-  573 (38.43/ 9.47)	P..T..........................................PG....MSQQVQSGMQTL...G..VSNSsaasmplsqQTSSAL.QSaqskyvKVWE......GN.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.75|      20|      21|     800|     820|       3
---------------------------------------------------------------------------
  800-  820 (34.42/19.78)	QMQQQQMVGSGmGPAYVQGPG
  823-  842 (38.33/17.89)	QLVSQGQVPSQ.APPNMPGGG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02938 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSRSGVPSLATNQSPVKMDMASVTSVMGPSPSSVNGSMVG
2) LTGGTSIGLQSMGQTPVAMHMSNMISSGMASSVPPAHTVLSSGQPTMTSLTGSGALTGTAQVPPNSGLSTFSSA
3) MQPQLQQQQQQQNPQLQQQQLPHLQQQQQLPQLQQQQQQ
4) QQQQQQLQQQSQHPQMQQQQMVGSGMGPAYVQGPGRSQLVSQGQVPSQAPPNMPGGGFMS
5) TITSMATGPAFSHVPSVPRVPSQAIPTLQTSSPLTNTQEGMTSGDNMQELKPSVSGMTQPSRPVPPAAANVNILN
6) VAGNSNIGISQPTGNVQGAVNIGQSVPGMSQGNHSGTQMMQSGVGMSQNMSALGQSTVSSGNGTMIPTPGMSQQVQSGMQTLGVSNSSAASMPLSQQT
235
381
728
786
294
458
274
454
766
845
368
555










Molecular Recognition Features






MoRF SequenceStartStop




1) MGPAYV
811
816