<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02936

Description Uncharacterized protein
SequenceMAEKQLIVAVEGTAAMGPYWHIVVSDYLDKIIRCFCSSELTGQKNSTSNVEFSLVTFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMFPIASNGNQTPQNVDGQRHCILVAASNPYPLPTPVYRPQIQNLEQVENSEAQTESCLSDAETVARSFAQCSVSLSVICPKQLAKLKAIYSAGKRNPRAADPPVDNVKNSQFLVLISENFMEGRAALSRSGVPSLATNQSPVKMDMASVTSVMGPSPSSVNGSMVGKLPVSVGNVATATVKVEPTTITSMATGPAFSHVPSVPRVPSQAIPTLQTSSPLTNTQEGMTSGDNMQELKPSVSGMTQPSRPVPPAAANVNILNNLSQARVMSSAALTGGTSIGLQSMGQTPVAMHMSNMISSGMASSVPPAHTVLSSGQPTMTSLTGSGALTGTAQVPPNSGLSTFSSASSNVAGNSNIGISQPTGNVQGAVNIGQSVPGMSQGNHSGTQMMQSGVGMSQNMSALGQSTVSSGNGTMIPTPGMSQQVQSGMQTLGVSNSSAASMPLSQQTSSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQIVRLISQDHMNNKAMNQHGFLGQLQEKKLCAVIQLPQQTLLLSVSDKACRLIGMLFPGDMVVFKPQMSSQQQLQLQQQQQQQQMQPQLQQQQQQQNPQLQQQQLPHLQQQQQLPQLQQQQQQLPQLQQQQLSQLQQQQQQQQQQQQQLQQQSQHPQMQQQQMVGSGMGPAYVQGPGRSQLVSQGQVPSQAPPNMPGGGFMS
Length810
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.04
Grand average of hydropathy-0.336
Instability index66.22
Isoelectric point8.46
Molecular weight86222.48
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02936
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     297.44|      47|      47|     674|     720|       1
---------------------------------------------------------------------------
  484-  531 (52.76/14.26)	..........................PGMSQ.......GNHSGTQMMQsgvgMSQNMSAL..........GQSTV.........SSGNG...TM...IPT...PGMSQQ
  537-  591 (43.22/10.18)	Q......................tlgVSNSS.......AASMPLSQQT....SSALQSAQskyvkvwegnLSGQR.........QGQ.P...VF.....I...TRLEGY
  592-  647 (51.08/13.54)	R.........................SASASetlaahwPQTMQIVRLI....SQDHMNNK...........AMNQ.........HGFLG...QL.QEKKLcavIQLPQQ
  648-  716 (67.25/20.46)	TlllsvsdkacrligmlfpgdmvvfkPQMSS.......QQQLQLQQQQ....QQQQMQPQ..........LQQQQ.........QQQNP...QL.QQQQL...PHL...
  717-  746 (46.28/11.49)	...............................................Q....QQQQL.PQ..........LQQQQ.........QQL.P...QL.QQQQL...SQLQQQ
  747-  796 (36.85/ 7.45)	Q........................qQQ..Q.......QQQQQLQQQS....QH....PQ..........MQQQQmvgsgmgpaYVQGPgrsQLvSQGQV...P.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     196.46|      52|      54|     290|     343|       2
---------------------------------------------------------------------------
  290-  343 (89.01/43.66)	VEPTTITSMATGPAFSHVP.....SVPRVPSQAIPT...LQTSSPLTNTqeGMTS.GDNMQEL
  347-  404 (75.84/32.61)	VSGMTQPSRPVPPAAANVNilnnlSQARVMSSAALT...GGTSIGLQSM..GQTPvAMHMSNM
  406-  439 (31.61/ 8.82)	.......S..SGMA.SSVP.....PAHTVLSSGQPTmtsLTGSGALTGT..............
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02936 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSRSGVPSLATNQSPVKMDMASVTSVMGPSPSSVNGSMVG
2) LTGGTSIGLQSMGQTPVAMHMSNMISSGMASSVPPAHTVLSSGQPTMTSLTGSGALTGTAQVPPNSGLSTFSSA
3) QQQQLQQQSQHPQMQQQQMVGSGMGPAYVQGPGRSQLVSQGQVPSQAPPNMPGGGFMS
4) TITSMATGPAFSHVPSVPRVPSQAIPTLQTSSPLTNTQEGMTSGDNMQELKPSVSGMTQPSRPVPPAAANVNILN
5) VAGNSNIGISQPTGNVQGAVNIGQSVPGMSQGNHSGTQMMQSGVGMSQNMSALGQSTVSSGNGTMIPTPGMSQQVQSGMQTLGVSNSSAASMPLSQQT
235
381
753
294
458
274
454
810
368
555










Molecular Recognition Features






MoRF SequenceStartStop




1) GPAYV
777
781