<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02935

Description Uncharacterized protein
SequenceMEGMIQDPSQPASQPQQQNQAVVGAERLNQALQQQLNLESVKTRAISLFKAITRILEDFDAYSRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNADNAPILPVMLSSKLLPEMEVEDNLKREQLLLGMQNLPIPSQIDKLKARIDMIAAACESAEKVLADTRKAYCFFSRQGPAILPTLDKGQAAKIQEQENLLRTAVNFGEGLRLPADQKLITPSLPLHLVDIMPAADGVQSFADPSGMYMKNTPLMSNNIGSQGSLLQATGAQLIGRSAASPSAATSATSYDNTTTSPLPYANSPRSATTMMNTPSPQQQTQQLQQQQQHQQQQQQQQQRQKMMQLPQHQQQLLAQQQFRQSTMHGLGQNQLPLHDLQGQTQQKFQSLHGQMQFSQPLGHQQFQGRQLPPGHVQHGIGQSQLNQGNQLSRHLGQFSSAANTALFNAAQGTPSTQMIPNMSATMSSQSLLPRMQFVPGSNPQRTHASQILSDQSMNNGLDILSCMHIHIHIHVLISISSGAQLLLPSFDFQFLPQPNKTKIWRN
Length548
PositionHead
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.05
Grand average of hydropathy-0.493
Instability index63.40
Isoelectric point9.01
Molecular weight60680.25
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02935
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.81|      18|      18|     456|     473|       2
---------------------------------------------------------------------------
  456-  473 (33.48/22.81)	PSTQMIP..NMSATMSSQSL
  475-  494 (30.32/19.85)	PRMQFVPgsNPQRTHASQIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.82|      22|      23|     350|     371|       3
---------------------------------------------------------------------------
  350-  371 (45.77/26.52)	QLPQHQQQLLAQQQF..RQ....STMHG
  376-  395 (37.48/19.92)	QLPLHDLQGQTQQKF...Q....S.LHG
  398-  421 (25.57/10.45)	QFSQ...PL.GHQQFqgRQlppgHVQHG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.25|      14|      18|     286|     303|       4
---------------------------------------------------------------------------
  286-  303 (18.12/23.88)	SPSaatSATSYDNtTTSP
  309-  322 (29.14/19.33)	SPR...SATTMMN.TPSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.04|      17|     389|     136|     154|       7
---------------------------------------------------------------------------
  117-  133 (27.89/10.62)	MLSSKLLPEMEVEDNLK
  138-  154 (30.14/19.19)	LLGMQNLPIPSQIDKLK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02935 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GAQLIGRSAASPSAATSATSYDNTTTSPLPYANSPRSATTMMNTPSPQQQTQQLQQQQQHQQQQQQQQQRQKMMQLPQHQQQLLAQQQFRQSTMHGLGQNQLPLHDLQGQTQQKFQSLHGQMQFSQPLGHQQFQGRQLPPGHVQHGIGQSQLNQGNQLSRH
276
436










Molecular Recognition Features






MoRF SequenceStartStop




NANANA