<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02932

Description Uncharacterized protein
SequenceMDPSQNFPPPMSGQFRPVVPSQQPQQFVSVPPQQFQPVGRGVTVMNAGFPSQTPQPQIPQVMQQLPARPGQPGHILPPPPSVSLPAAQPNLHVNPGASVPQPNIQAPNNYFPGVPASHLSSSYTFAPSSYGQVTVSHNAMAQYQPMAQLQAPNVPVGGQVGIHVSQSTSVTSAQQIGEQPSASTATIPPKPTEEALTDWIEHTSANGRRYYYNKKTRQSSWEKPLELMTPIERADASTNWKEYTSPDGRKYYYNKVTNLSTWSLPEELKLAREQVEMASAKGPLSDVSSHIPAPVPPASKAQSGADTPSTIIQGASSSPVPVAPVPSSSKIESVVVSGSDLPVATSSTVTNVDVVQIVEDTITPSVAVSESSEVSLSVADAATTLMNNISKVSSLDMVSSEGVSTQNADETVKDVVVSEKINNALEEKAIDQESLTYASKQEAKDAFKALLESANVGSDWTWDQAMRVIINDKRYGALRTLGERKQAFNEFLGQKKKQDAEERRIKQKKAREEYKKMLEECLELTSSTRWSKAVTMFENDERYKAVEREKDRKDFFENYIDELRQKERVKAQEQRKQNVMEYRRFLESCDFIKANSQWRKVQDRLETDERCSRLDKIDRLEIFQEYIRDLEKEEEEQRRIQKEELRKTERKNRDEFRKLVEGHVAAGTLTAKTHWRDYCMMVKDSPPFLAVASNTSGPTPKDLFEDVAEELQKQYDDDKARVKDAVKLRKICLASTWTLEDLKAAILEDISSPPISDVNLKLIFEELLERVKEKEEKEAKKRKRLADDFFDLLHSMKEITSSSAWEDCKHLLESSQEFSSIGDEDICKGIFDEYVKQLKGDAKEKERRRKEDKYYFSCFVLQAKKEKERDERERRKEKHGRDKERGYEREKEEHLREEPSEAHGDISEVHDENENKRSGKEDSKKHRKRHQSSVDNSNETEKDRTKTHRHSSDRRKSKKHASTPESDNESRHKRHKRDHRNGSRRNLDPEELEDGEFGERESQ
Length1003
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.988
Instability index60.22
Isoelectric point6.13
Molecular weight114101.82
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02932
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     474.71|      66|      66|     513|     578|       1
---------------------------------------------------------------------------
  446-  510 (77.51/40.96)	AFKALLESA....NVGSDWTWD....QAMRV................I.IN.DKRYG.ALR...TL.GE...R.....K....QAFNEF....LGQKK....KQ...DAEERRikqK...KA
  513-  578 (105.99/58.60)	EYKKMLEECL...ELTSSTRWS....KAVTM................F.EN.DERYK.AVE...RE.KD...R.....K....DFFENYI.DELRQKE....RV...KAQEQR...K...QN
  581-  652 (76.34/40.24)	EYRRFLESCD...FIKANSQWR....KVQDR................L.ET.DERCS.RLD...K..ID...R.....L....EIFQEYI.RDLEKEEeeqrRI...QKEELR...KterKN
  655-  721 (66.57/34.18)	EFRKLVEGHVaagTLTAKTHWR....DYCMM................V.KD.SPPFL.AVA...SN.TSgptP.....K....DLFEDVA.EEL.QKQ...........YDDD...K...AR
  724-  809 (30.31/11.73)	DAVKLRKICL...AST....WTledlKAAILedissppisdvnlkliF.EElLERVKeKEE...KEaKK...R.....KrladDFF.....DLLHSMK....EItssSAWEDC...K.....
  810-  879 (56.60/28.01)	...HLLESSQ...EFSSIGDED....ICKGI................F....DEYVK.QLKgdaKE.KE...RrrkedK....YYFSCFVlQAKKEKE....RD...ERERRK...E...KH
  886-  950 (61.39/30.97)	GYEREKEEHL...REEPSEAHG....DISEV................HdEN.ENKRS.GKE...DS.KK...H.....R....KRHQSSV.DNSNETE....KD...RTKTHR...H.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.24|      39|      40|     189|     227|       2
---------------------------------------------------------------------------
  189-  227 (76.37/56.91)	PKPTEEALTDWIEHTSANGRRYYYNKKTRQSSWEKPLEL
  230-  268 (74.87/55.63)	PIERADASTNWKEYTSPDGRKYYYNKVTNLSTWSLPEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     106.20|      16|      17|       3|      18|       3
---------------------------------------------------------------------------
    3-   18 (33.73/14.30)	PSQNFPPP...MSGQFRPV
   50-   64 (26.54/ 9.90)	PSQT.PQP...QIPQVMQQ
   72-   87 (24.95/ 8.92)	PGHILPPP...PSVSLPAA
   95-  113 (20.98/ 6.48)	PGASVPQPniqAPNNYFPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.85|      14|      18|     318|     335|       5
---------------------------------------------------------------------------
  318-  334 (17.71/13.97)	SPVPVApvpSSSKIESV
  339-  352 (23.14/ 9.45)	SDLPVA...TSSTVTNV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.33|      25|      34|     386|     410|       6
---------------------------------------------------------------------------
  386-  410 (40.18/26.67)	MNNISKVSSLDMVSSEGVSTQNADE
  421-  445 (39.15/25.79)	INNALEEKAIDQESLTYASKQEAKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.12|      13|      24|     953|     969|       7
---------------------------------------------------------------------------
  953-  965 (22.08/ 6.35)	DRRKSKKHASTPE
  978-  990 (23.04/12.15)	DHRNGSRRNLDPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.32|      11|      24|     126|     137|       8
---------------------------------------------------------------------------
  126-  137 (17.20/15.78)	APS..SYGQVTVsH
  151-  163 (17.12/ 9.63)	APNvpVGGQVGI.H
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02932 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AQYQPMAQLQAPNVPVGGQVGIHVSQSTSVTSAQQIGEQPSASTATIPPKPTEEALTDWI
2) KERDERERRKEKHGRDKERGYEREKEEHLREEPSEAHGDISEVHDENENKRSGKEDSKKHRKRHQSSVDNSNETEKDRTKTHRHSSDRRKSKKHASTPESDNESRHKRHKRDHRNGSRRNLDPEELEDGEFGERESQ
3) LAREQVEMASAKGPLSDVSSHIPAPVPPASKAQSGADTPSTIIQGASSSP
4) MDPSQNFPPPMSGQFRPVVPSQQPQQFVSVPPQQFQPVGRGVTVMNAGFPSQTPQPQIPQVMQQLPARPGQPGHILPPPPSVSLPAAQPNLHVNPGASVPQPNIQAPNNYFPG
141
867
270
1
200
1003
319
113










Molecular Recognition Features






MoRF SequenceStartStop




1) KYYFSCFVLQ
853
862