<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02931

Description Uncharacterized protein
SequenceMNRADASTNWKEYTSPDGRKYYYNKVTNLSTWSLPEELKLAREQVEMASAKGPLSDVSSHIPAPVPPASKAQSGADTPSTIIQGASSSPVPVAPVPSSSKIESVVVSGSDLPVATSSTVTNVDVVQIVEDTITPSVAVSESSEVSLSVADAATTLMNNISKVSSLDMVSSEGVSTQNADETVKDVVVSEKINNALEEKAIDQESLTYASKQEAKDAFKALLESANVGSDWTWDQAMRVIINDKRYGALRTLGERKQAFNEFLGQKKKQDAEERRIKQKKAREEYKKMLEECLELTSSTRWSKAVTMFENDERYKAVEREKDRKDFFENYIDELRQKERVKAQEQRKQNVMEYRRFLESCDFIKANSQWRKVQDRLETDERCSRLDKIDRLEIFQEYIRDLEKEEEEQRRIQKEELRKTERKNRDEFRKLVEGHVAAGTLTAKTHWRDYCMMVKDSPPFLAVASNTSGPTPKDLFEDVAEELQKQYDDDKARVKDAVKLRKICLASTWTLEDLKAAILEDISSPPISDVNLKLIFEELLERVKEKEEKEAKKRKRLADDFFDLLHSMKEITSSSAWEDCKHLLESSQEFSSIGDEDICKGIFDEYVKQLKGDAKEKERRRKEDKAKKEKERDERERRKEKHGRDKERGYEREKEEHLREEPSEAHGDISEVHDENENKRSGKEDSKKHRKRHQSSVDNSNETEKDRTKTHRHSSDRRKSKKHASTPESDNESRHKRHKRDHRNGSRRNLDPEELEDGEFGERESQ
Length764
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.05
Grand average of hydropathy-1.140
Instability index54.25
Isoelectric point5.92
Molecular weight88221.04
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02931
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     381.24|      65|      65|     489|     553|       1
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  182-  267 (52.60/28.23)	...VKDVVVSEKInnaleekaidqeslTYASK......Q.....EAK.DAFKALL..E.saNVGSDWT.WDQAM.RV...IINDkrygalrtLGERK....QAFN....E.FLGQKKK
  279-  346 (59.34/32.87)	KAR.EEYKKMLEE..............CLELT..sstrW.....S.....KAVTMfeN...DERYKAVeREKDR.KD...FFEN........YIDEL....RQKE....RvKAQEQRK
  352-  411 (65.74/37.28)	YRRFLESCDFIKA................NSQ......WrkvqdRLEtDERCSRL..D...KIDRLEI.............FQE........YI.RD....LEKE....E.EEQRRIQ
  417-  487 (55.08/29.94)	KTERKNRDEFRKL..........veghVAAGTltakthW.......R.DY.CMMV..K...D..SPPF.LAVAS.NTsgpTPKD........LFEDV....AEEL....Q.KQYDD..
  489-  553 (102.53/62.61)	KARVKDAVKLRKI..............CLAST......W.....TLE.DLKAAIL..E...DISSPPI.SDVNL.KL...IFEE........LLERV....KEKE....E.KEAKKRK
  567-  628 (45.94/23.65)	..........KEI..............TSSSA......W.......E.DCK.HLL..EssqEFSS..I.GDEDIcKG...IFDE........YVKQLkgdaKEKErrrkE.DKAKKEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     120.91|      22|      22|     704|     725|       2
---------------------------------------------------------------------------
  649-  668 (28.57/13.25)	EREK.E.EHLRE...EPSEAHGDIS
  672-  695 (25.00/10.58)	DENENK.RSGKEdsKKHRKRHQSSV
  704-  725 (36.56/19.23)	DRTKTH.RHSSD..RRKSKKHASTP
  728-  750 (30.79/14.91)	DNESRHkRHKRD..HRNGSRRNLDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.53|      21|      29|      58|      86|       3
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   58-   78 (42.34/36.48)	SSHIP.APVPPASKAQ....SGADTP
   87-  112 (31.19/11.74)	SSPVPvAPVPSSSKIEsvvvSGSDLP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02931 with Med35 domain of Kingdom Viridiplantae
Unable to open file!