<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02930

Description Uncharacterized protein
SequenceMANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQVPSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQFAPSSFGLPQNNVSAPSQFHPISQVHAPVAPVAGQPWLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKEREYAAEEKRRNIAEYRKFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLLIFQDYIHDLEKEEEEKKKMQKEQLRRAERKNRDAFRKLMEEHVADGTLTAKTYWRDYCLKVKELPQYLAVASNTSGSTPKDLFEDVAEELDKQYHEHKTRIKEAMKTGKVTMVYSWTFEDFKAAISEDVGSSSISDINLKVLLLQGNSCFHQQKKEGIGGKGKEGSPNLL
Length775
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.804
Instability index55.95
Isoelectric point6.93
Molecular weight86337.45
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02930
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     178.33|      36|      38|     174|     209|       1
---------------------------------------------------------------------------
  141-  169 (28.32/11.56)	STGNQNVSL.AT...P...tqHTSQQPPPSSADTNA.........
  170-  200 (51.93/27.89)	...NVP..S.LT...P.....QSSDWQEHTSADGRRYYYNKRTRQ
  201-  241 (56.05/30.74)	SSWEKPLEL.MT...PieradASTVWKEFTTPEGRKYYHNKVTKE
  242-  281 (42.03/21.04)	SKWTIPEELkLAreqA.....QAASSQGTPSGSGVAPQAPVATAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     360.82|      63|      66|     491|     553|       2
---------------------------------------------------------------------------
  426-  483 (80.17/58.42)	..EAKNAFKSLL.E...SANVQSDWTWEQTMREIINDKRYGAL...KTLGERKQAFNEYLG..QRKKLE
  491-  553 (99.75/74.67)	QKKAREEFTKMLEE...SKELTSSMRWSKAQSLFENDERFKAV...ERARDREDLFENYIVDLERKERE
  559-  620 (95.73/71.34)	KRRNIAEYRKFLES...CDFIKANSQWRKVQDRLEDDERCSRL...EKI.DRLLIFQDYIHDLEKEEEE
  633-  701 (85.17/62.57)	ERKNRDAFRKLMEEhvaDGTLTAKTYWRDYCLKVKELPQYLAVasnTSGSTPKDLFEDVAEELDKQYHE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      91.08|      14|      17|      24|      37|       3
---------------------------------------------------------------------------
    4-   17 (19.98/ 6.60)	NSQPSSAQPHWPPA
   24-   37 (26.04/10.65)	QSYGSPLSSQFRPV
   44-   57 (23.82/ 9.17)	QHFVPAASQQFRPV
   76-   86 (21.23/ 7.43)	Q.FSQPM.QQF.PP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.90|      23|      36|     287|     320|       4
---------------------------------------------------------------------------
  287-  309 (40.89/17.79)	PTTAIPVSSNTLQDSSPVSVTPV
  324-  346 (38.00/35.96)	PVAQSAAMSATGVQLPVVSVTPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.00|      15|      20|      88|     106|       5
---------------------------------------------------------------------------
   87-  102 (25.37/12.77)	R....PnQPGLSTPSQ.QPIQ
  106-  125 (17.62/11.03)	SsfglP.QNNVSAPSQfHPIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.23|      14|      37|     310|     323|       6
---------------------------------------------------------------------------
  310-  323 (26.09/15.09)	ANPS.PTSVSGPTTG
  348-  362 (19.14/ 8.97)	AVPSrGSTVSAPSVG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02930 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQVPSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQFAPSSFGLPQNNVSAPSQFHPISQVHAPVAPVAGQPWLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRT
2) VQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVY
3) WEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTK
4) WTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSAT
1
336
203
244
198
421
240
334










Molecular Recognition Features






MoRF SequenceStartStop




NANANA