<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02929

Description Uncharacterized protein
SequenceMANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQVPSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQFAPSSFGLPQNNVSAPSQFHPISQVHAPVAPVAGQPWLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKEREYAAEEKRRNIAEYRKFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLLIFQDYIHDLEKEEEEKKKMQKEQLRRAERKNRDAFRKLMEEHVADGTLTAKTYWRDYCLKVKELPQYLAVASNTSGSTPKDLFEDVAEELDKQYHEHKTRIKEAMKTGKVTMVYSWTFEDFKAAISEDVGSSSISDINLKLVYDELLERAKEKEEKEAKKRQRLADDFTRLLHTYKEITASSDWEESKPLFEESQEYRYFTLIFALKINNRLFIIFLTFMILSSFDGFLPCFLLDQLRKKALGERSLRNTLHTYRRKLKKRSVNERRKRLKRRKIEKRKINGKRRRRRERRRKENGRGKKVKTEVKKMKQIVRI
Length919
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.08
Grand average of hydropathy-0.864
Instability index59.21
Isoelectric point9.48
Molecular weight104620.79
Publications
PubMed=23257886

Function

Annotated function 
ECO:0000256	PIRNR:PIRNR023869
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats
>MDP02929
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.52|      15|      17|      92|     106|       1
---------------------------------------------------------------------------
   92-  106 (30.35/14.76)	GLSTPSQQPIQFAPS
  148-  162 (24.17/10.32)	SLATPTQHTSQQPPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.40|      15|      15|     860|     874|       2
---------------------------------------------------------------------------
  860-  874 (26.22/17.43)	RRKLKKRSVNERRKR
  877-  891 (25.19/16.43)	RRKIEKRKINGKRRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     165.44|      36|      38|     174|     209|       3
---------------------------------------------------------------------------
  174-  209 (68.68/34.36)	LT...P.....QSSDWQEHTSADGRRYYYNKRTRQSSWEKPLEL
  210-  250 (59.31/28.80)	MT...PieradASTVWKEFTTPEGRKYYHNKVTKESKWTIPEEL
  252-  287 (37.45/15.82)	LAreqA.....QAASSQGTPSGSGVAPQAPVATAVSAAETP...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     428.69|      63|      66|     491|     553|       4
---------------------------------------------------------------------------
  426-  483 (74.35/57.82)	..EAK....NAFKSLL.E...SANVQSDWTWEQTMREIINDKRYGAL...KT..LGERKQAFNEYLG....QR.KKLE
  491-  553 (101.02/82.05)	QKKAR....EEFTKMLEE...SKELTSSMRWSKAQSLFENDERFKAV...ER..ARDREDLFENYIVD..LER.KERE
  559-  620 (89.90/71.95)	KRRNI....AEYRKFLES...CDFIKANSQWRKVQDRLEDDERCSRL...EK..I.DRLLIFQDYIHD..LEK.EEEE
  633-  701 (80.57/63.47)	ERKNR....DAFRKLMEEhvaDGTLTAKTYWRDYCLKVKELPQYLAVasnTS..GSTPKDLFEDVAEE..LDK.QYHE
  706-  759 (46.70/32.70)	IKEA..........M..K...TGKVTMVYSWT.....FED...FKAA.isEDvgSSSISDINLKLVYDelLERaKEKE
  762-  803 (36.15/23.13)	EAKKRqrlaDDFTRLLHT...YKEITASSDWEESKPLFEESQEYR.................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     110.91|      14|      17|      24|      37|       5
---------------------------------------------------------------------------
    4-   17 (21.21/10.98)	NSQPSSAQPHWPPA
   24-   37 (25.81/15.27)	QSYGSPLSSQFRPV
   44-   57 (23.89/13.48)	QHFVPAASQQFRPV
   63-   75 (18.08/ 8.06)	PNIGMP.AVQNQQM
   76-   86 (21.92/11.64)	Q.FSQPM.QQF.PP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.08|      12|      15|     308|     319|       6
---------------------------------------------------------------------------
  308-  319 (23.18/12.22)	PVANPSPTSVSG
  324-  335 (18.90/ 8.63)	PVAQSAAMSATG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02929 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ERRKRLKRRKIEKRKINGKRRRRRERRRKENGRGKKVKTEV
2) MANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQVPSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQFAPSSFGLPQNNVSAPSQFHPISQVHAPVAPVAGQPWLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRT
3) VQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVY
4) WEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTK
5) WTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSAT
870
1
336
203
244
910
198
421
240
334










Molecular Recognition Features






MoRF SequenceStartStop




NANANA