<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02920

Description Uncharacterized protein
SequenceMEGMIQDPSQPASQPQQQNQAVVGAERLNQALQQQLNLESVKTRAISLFKAITRILEDFDAYSRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNADNAPILPVMLSSKLLPEMEVEDNLKREQLLLGMQNLPIPSQIDKLKARIDMIAAACESAEKVLADTRKAYCFFSRQGPAILPTLDKGQAAKIQEQENLLRTAVNFGEGLRLPADQKLITPSLPLHLVDIMPAADGVQSFADPSGMYMKNTPLMSNNIGSQGSLLQATGAQLIGRSAASPSAATSATSYDNTTTSPLPYANSPRSATTMMNTPSPQQQTQQLQQQQQHQQQQQQQQQRQKMMQLPQHQQQLLAQQQFRQSTMHGLGQNQLPLHDLQGQTQQKFQSQFQGRQLPPGHVQHGIGQSQLNQGNQLSRHLGQFSSAANTALFNAAQGTPSTQMIPNMSATMSSQSLLPRMQFVPGSNPQRTHASQILSDQMFNMGSNPGGLMAMQPQPQQQQQQSQQQHGSQAAFGNMGTAQNLQSNMAALQNNPNFAQQRQQNQQ
Length549
PositionHead
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.04
Grand average of hydropathy-0.638
Instability index62.76
Isoelectric point9.11
Molecular weight60538.58
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02920
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.08|      18|      18|     442|     459|       3
---------------------------------------------------------------------------
  442-  457 (23.89/ 7.06)	...PSTQMIPNMSATMSSQ
  492-  510 (24.60/ 7.51)	GGlMAMQPQPQQQQQQSQQ
  511-  528 (26.59/ 8.75)	QH.GSQAAFGNMGTAQNLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.25|      14|      18|     286|     303|       4
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  286-  303 (18.12/19.84)	SPSaatSATSYDNtTTSP
  309-  322 (29.14/16.02)	SPR...SATTMMN.TPSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.63|      12|      19|     459|     471|       5
---------------------------------------------------------------------------
  459-  471 (20.68/13.72)	LLPRMqFVPGSNP
  480-  491 (24.95/12.27)	LSDQM.FNMGSNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.12|      11|      29|     323|     333|       7
---------------------------------------------------------------------------
  323-  333 (21.25/ 7.11)	QQQTQQLQQQQ
  353-  363 (19.87/ 6.18)	QHQQQLLAQQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02920 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GAQLIGRSAASPSAATSATSYDNTTTSPLPYANSPRSATTMMNTPSPQQQTQQLQQQQQHQQQQQQQQQRQKMMQLPQHQQQLLAQQQFRQSTMHGLGQNQLPLHDLQGQTQQKFQSQFQGRQLPPGHVQHGIGQSQLNQGNQLSRHLGQFSSAANTALFNAAQGTPSTQMIPNMSATMSSQSLLPRMQFVPGSNPQRTHASQILSDQMFNMGSNPGGLMAMQPQPQQQQQQSQQQHGSQAAFGNMGTAQNLQSNMAALQNNPNFAQQRQQNQQ
276
549










Molecular Recognition Features






MoRF SequenceStartStop




NANANA