<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02918

Description Uncharacterized protein
SequenceMGSLVEEIEGDREYDFEDVIFVAVGKNVEKSKTTLDWAVDNFPGKKICVLHVHRPTHVLALTADGKLARSKLKQHAVEAFQKLERQRLQERLDEYLLILDHSGVQADALWIEMDSVEKGILEIIARHNIRWLVMGAAADKYYSKKLVELKSKKATFVCQNAPVSCHIWFACKGRLIYTRVGRQDGSSREIATPSPPMDSPLRTEQAVMLSESVLRERSPEPQEDANVVRGNLRPISLYSVHPNLPSNGVVDTYGSIMLQMDEEEHQGQASNETDQQLEVSTIDDHNLKQEVFAETMKRWKEENDAIEAACKAKALESLCVKEMSRRKEMEELLEREKQEVQKMKDQHDEFIKDLQMVKDQRTILESQIVESQCVVEGLEEKMFSAVELLISFKKKRDDLRIEHENAIRVLKNLRKLVNGGDSSFPGSQILEFSFIEINNATRDFDPSWKIGEGKYGSVYKGLLRHMNVAIKMLPSYGSQSLLEFENEVEILSRIRHPNLVTIIGTCPESRSLVFEYLRNGSLEERLACKNKSPPLPWQTRIRIASEICSALIFLHSNKPCIPHGNLKPSKVLLDSNFVSKLIDSGIYRLIPQGKSTDTSALSSVYMDPVYLENGEVTRESDVYSFGMILLRLLTGRSALGILNDVKCSIETENFNMVLDRTAGNWPLEEAQLLAHLAIRCCDTQPLDRPDFVSEIWSVLGPMRDSCVNSASCLEAKELRCAPSHFVCPIFQEVMKDPIIAADGFTYEADAIRGWLDSGHDRSPMTNLKLEHCNLVPNYALLQAIQEWQQQY
Length791
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.352
Instability index50.12
Isoelectric point5.52
Molecular weight89798.71
Publications
PubMed=23257886

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
plasma membrane	GO:0005886	IEA:EnsemblPlants

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02918
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.36|      35|      48|     185|     222|       1
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  185-  222 (56.41/35.35)	GSSREIAT....PSPPMDSPLRTEQAVMLSesvLRERSPEPQ
  230-  268 (56.94/29.46)	GNLRPISLysvhPNLPSNGVVDTYGSIMLQ...MDEEEHQGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.64|      13|      48|     288|     302|       2
---------------------------------------------------------------------------
  288-  302 (19.57/21.74)	KQEVfaETMKRWKEE
  337-  349 (24.07/17.37)	KQEV..QKMKDQHDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     159.09|      46|      48|     383|     428|       3
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  365-  420 (62.78/40.79)	ESQIV..ESQcvvegleekmFSAVEL.LISFKKKRDDL.RIEHENAIRVLKNLRKLVNGG
  421-  469 (71.83/47.70)	DSSFP..GSQ.......ileFSFIEI.NNATRDFDPSW.KIGEGKYGSVYKGLLRHMNVA
  470-  503 (24.48/11.51)	IKMLPsyGSQ................sLLEFENEVEILsRIRHPNLVTII..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.19|      28|     567|     131|     158|       7
---------------------------------------------------------------------------
  131-  158 (48.78/34.86)	WLVMGAAADKYYSK....KLVELKSKKATFVC
  696-  727 (48.41/34.55)	WSVLGPMRDSCVNSasclEAKELRCAPSHFVC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02918 with Med32 domain of Kingdom Viridiplantae
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