<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02916

Description Uncharacterized protein
SequenceMANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQVPSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQFAPSSFGLPQNNVSAPSQFHPISQVHAPVAPVAGQPWLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTSSETTATQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKEREYAAEEKRRNIAEYRKFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLLIFQDYIHDLEKEEEEKKKMQKEQLRRAERKNRDAFRKLMEEHVADGTLTAKTYWRDYCLKVKELPQYLAVASNTSGSTPKDLFEDVAEELDKQYHEHKTRIKEAMKTGKVTMVYSWTFEDFKAAISEDVGSSSISDINLKLVYDELLERAKEKEEKEAKKRQRLADDFTRLLHTYKEITASSDWEESKPLFEESQEYRSIAEESFRREIFEEYITHLQEKAKEKERKREEEKAKKEKDREEKDKRKEKEKERKEKEREREREKGKDRSKKDETDSENLDISDSHGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ
Length983
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-1.169
Instability index57.89
Isoelectric point6.62
Molecular weight112015.80
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02916
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     336.89|      45|      45|     822|     866|       1
---------------------------------------------------------------------------
  477-  515 (31.37/10.39)	.....................QRKKLE..AEERR.MRQK....KAREEF.TKMLEESKEltssmRWSK
  530-  585 (43.43/17.21)	ERARDRE....dlfenyivdlERKEREyaAEEKR..RNIAEYRKFLESC.DFIKANSQW.....RKVQ
  586-  643 (41.53/16.13)	DRLEDDErcsrlekidrllifQDYIHD..LE.KE.EEEKKKMQKEQLRR.AERKNRDAF.....RKLM
  752-  788 (30.38/ 9.83)	......................ERAKE..KEEKE.AKKRQRLADDFTRL.LHTYKEITA.....SSDW
  789-  816 (31.65/10.54)	EESKPLF..............EE.SQE...YRSI.AEESF............RRE.........IFEE
  817-  859 (57.60/25.22)	..YITHL..............QEKAKE..KERKR.EEEKAKKEKDREEK.DKRKEKEKE.....RKEK
  860-  905 (49.31/20.53)	ERERERE..............KGKDRS..KKDET.DSENLDISDSHGHKeEKKKEKEKD.....RKHR
  906-  934 (25.26/ 6.93)	KRH...............................aADDGSSDKDDREES.KKSRRHGSD.....RK..
  935-  965 (26.36/ 7.56)	.............................KSRKH.AHSPDSDSESRHRK.HKRDHRDGS.....RRN.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     143.88|      16|      19|      24|      39|       2
---------------------------------------------------------------------------
   24-   39 (28.69/14.79)	QSYGSPLSSQFRPV..VP
   44-   61 (19.85/ 7.85)	QHFVPAASQQFRPVgqVP
   76-   88 (24.56/11.54)	Q.FSQPMQ.QFPP...RP
  106-  118 (21.65/ 9.26)	SSFGLP...QNNVS..AP
  119-  133 (25.79/12.51)	SQF.HPISQVHAPV..AP
  262-  276 (23.34/10.59)	SQ.GTPSGSGVAPQ..AP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     152.49|      36|      38|     174|     209|       3
---------------------------------------------------------------------------
  144-  169 (24.78/10.87)	NQNVSLATP...tqHTSQQPPPSSADTNA............
  170-  203 (66.99/44.69)	NVP..SLTP.....QSSDWQEHTSADGRRYYYNKRTRQSSW
  204-  244 (60.72/39.67)	EKPLELMTPieradASTVWKEFTTPEGRKYYHNKVTKESKW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     127.28|      35|      35|     279|     313|       4
---------------------------------------------------------------------------
  279-  309 (48.45/27.91)	.................TAVSAAETPTTA.............IPVS.SNTLQDSS...P.VSVTPV
  310-  346 (39.19/21.20)	ANPS............pTSVSG...PTTG..............PVAqSAAMSATGvqlPvVSVTPV
  348-  408 (39.63/21.52)	AVPSrgstvsapsvgatTAVTSSETTATQdtmhfadgasaqdIEEA.KKGMATAG...K.VNMTPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      48.27|      10|      38|     425|     434|       5
---------------------------------------------------------------------------
  425-  434 (15.92/ 9.13)	EAKNAFKSLL
  456-  465 (15.27/ 8.45)	KRYGALKTLG
  466-  475 (17.08/10.35)	ERKQAFNEYL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02916 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LQEKAKEKERKREEEKAKKEKDREEKDKRKEKEKERKEKEREREREKGKDRSKKDETDSENLDISDSHGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ
2) MANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQVPSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQFAPSSFGLPQNNVSAPSQFHPISQVHAPVAPVAGQPWLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRT
3) VQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTSSETTATQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVY
4) WEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTK
5) WTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSAT
821
1
336
203
244
983
198
420
240
334










Molecular Recognition Features






MoRF SequenceStartStop




1) GYEELEDG
2) KDDREESKKSRRH
3) KEEKKKEKEKDRKHRKRHAADD
4) RHRKHKRDHR
5) RKKSRKH
967
917
891
950
933
974
929
912
959
939