<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02916

Description Uncharacterized protein
SequenceMANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQVPSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQFAPSSFGLPQNNVSAPSQFHPISQVHAPVAPVAGQPWLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTSSETTATQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKEREYAAEEKRRNIAEYRKFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLLIFQDYIHDLEKEEEEKKKMQKEQLRRAERKNRDAFRKLMEEHVADGTLTAKTYWRDYCLKVKELPQYLAVASNTSGSTPKDLFEDVAEELDKQYHEHKTRIKEAMKTGKVTMVYSWTFEDFKAAISEDVGSSSISDINLKLVYDELLERAKEKEEKEAKKRQRLADDFTRLLHTYKEITASSDWEESKPLFEESQEYRSIAEESFRREIFEEYITHLQEKAKEKERKREEEKAKKEKDREEKDKRKEKEKERKEKEREREREKGKDRSKKDETDSENLDISDSHGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ
Length983
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-1.169
Instability index57.89
Isoelectric point6.62
Molecular weight112015.80
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02916
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     336.89|      45|      45|     822|     866|       1
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  477-  515 (31.37/10.39)	.....................QRKKLE..AEERR.MRQK....KAREEF.TKMLEESKEltssmRWSK
  530-  585 (43.43/17.21)	ERARDRE....dlfenyivdlERKEREyaAEEKR..RNIAEYRKFLESC.DFIKANSQW.....RKVQ
  586-  643 (41.53/16.13)	DRLEDDErcsrlekidrllifQDYIHD..LE.KE.EEEKKKMQKEQLRR.AERKNRDAF.....RKLM
  752-  788 (30.38/ 9.83)	......................ERAKE..KEEKE.AKKRQRLADDFTRL.LHTYKEITA.....SSDW
  789-  816 (31.65/10.54)	EESKPLF..............EE.SQE...YRSI.AEESF............RRE.........IFEE
  817-  859 (57.60/25.22)	..YITHL..............QEKAKE..KERKR.EEEKAKKEKDREEK.DKRKEKEKE.....RKEK
  860-  905 (49.31/20.53)	ERERERE..............KGKDRS..KKDET.DSENLDISDSHGHKeEKKKEKEKD.....RKHR
  906-  934 (25.26/ 6.93)	KRH...............................aADDGSSDKDDREES.KKSRRHGSD.....RK..
  935-  965 (26.36/ 7.56)	.............................KSRKH.AHSPDSDSESRHRK.HKRDHRDGS.....RRN.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     143.88|      16|      19|      24|      39|       2
---------------------------------------------------------------------------
   24-   39 (28.69/14.79)	QSYGSPLSSQFRPV..VP
   44-   61 (19.85/ 7.85)	QHFVPAASQQFRPVgqVP
   76-   88 (24.56/11.54)	Q.FSQPMQ.QFPP...RP
  106-  118 (21.65/ 9.26)	SSFGLP...QNNVS..AP
  119-  133 (25.79/12.51)	SQF.HPISQVHAPV..AP
  262-  276 (23.34/10.59)	SQ.GTPSGSGVAPQ..AP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     152.49|      36|      38|     174|     209|       3
---------------------------------------------------------------------------
  144-  169 (24.78/10.87)	NQNVSLATP...tqHTSQQPPPSSADTNA............
  170-  203 (66.99/44.69)	NVP..SLTP.....QSSDWQEHTSADGRRYYYNKRTRQSSW
  204-  244 (60.72/39.67)	EKPLELMTPieradASTVWKEFTTPEGRKYYHNKVTKESKW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     127.28|      35|      35|     279|     313|       4
---------------------------------------------------------------------------
  279-  309 (48.45/27.91)	.................TAVSAAETPTTA.............IPVS.SNTLQDSS...P.VSVTPV
  310-  346 (39.19/21.20)	ANPS............pTSVSG...PTTG..............PVAqSAAMSATGvqlPvVSVTPV
  348-  408 (39.63/21.52)	AVPSrgstvsapsvgatTAVTSSETTATQdtmhfadgasaqdIEEA.KKGMATAG...K.VNMTPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      48.27|      10|      38|     425|     434|       5
---------------------------------------------------------------------------
  425-  434 (15.92/ 9.13)	EAKNAFKSLL
  456-  465 (15.27/ 8.45)	KRYGALKTLG
  466-  475 (17.08/10.35)	ERKQAFNEYL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02916 with Med35 domain of Kingdom Viridiplantae
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