<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02915

Description Uncharacterized protein
SequenceMANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQVPSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQVQYGQTNRPLTSEPPQSHQSAPPLNSHMPGVGVPGVPPSSYGFAPSSFGLPQNNVSAPSQFHPISQVHAPVAPVAGQPWLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKEREYAAEEKRRNIAEYRKFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLLIFQDYIHDLEKEEEEKKKMQKEQLRRAERKNRDAFRKLMEEHVADGTLTAKTYWRDYCLKVKELPQYLAVASNTSGSTPKDLFEDVAEELDKQYHEHKTRIKEAMKTGKVTMVYSWTFEDFKAAISEDVGSSSISDINLKLVYDELLERAKEKEEKEAKKRQRLADDFTRLLHTYKEITASSDWEESKPLFEESQEYRSIAEESFRREIFEEYITHLQEKAKEKERKREEEKAKKEKDREEKDKRKEKEKERKEKEREREREKGKDRSKKDETDSENLDISDSHGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ
Length1026
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-1.156
Instability index59.38
Isoelectric point6.75
Molecular weight116507.71
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02915
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     254.09|      36|      38|     216|     251|       1
---------------------------------------------------------------------------
  117-  156 (26.87/10.31)	..P.....QS.....HQSAPplnshmpgvgvpgvpPSSYGFA....PSSFGLPQNN
  163-  191 (39.59/19.08)	FHP.....ISQVHAPVAPVA...............GQPWL.......STGNQNVSL
  192-  213 (35.03/15.94)	ATP..........TQHTS........................QQPPPSSADTNANV
  216-  251 (64.16/36.00)	LTP.....QSSDWQEHTSAD...............GRRYYYNKRTRQSSWEKPLEL
  252-  292 (52.36/27.88)	MTPieradASTVWKEFTTPE...............GRKYYHNKVTKESKWTIPEEL
  297-  329 (36.08/16.66)	EQA.....QAASSQGTPSGS...............GVAPQAPVATAVSAAETP...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     222.86|      38|      38|     866|     903|       2
---------------------------------------------------------------------------
  567-  595 (28.81/ 8.99)	......ERF..............KAVERARD.REDL.FE...NyivD...........................LERK.ERE
  596-  669 (24.26/ 6.49)	YAAEEKRRNiaeyrkflescdfiKANSQWRK.VQDRlED.......DERcsrlekidrllifqdyihdleKEEEEKKKmQKE
  866-  903 (59.23/25.67)	EKAKEKERK..............REEEKAKK.EKDR.EE...K...DKR.....................KEKEKERK.EKE
  904-  942 (37.30/13.65)	...RERERE..............KGKDRSKKdETDS.ENldiS...DSH.....................GHKEEKKK.EKE
  943-  977 (41.31/15.84)	KDRKHRKRH..............AADDGSSD.KDDR.EE...S...KKS.....................RRHGSDRK....
  978- 1008 (31.95/10.71)	.....KSRK..............HAHSPDSD.SESR.HR...K...HKR.....................DHRDGSRR.N..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      80.32|      14|      17|      24|      37|       3
---------------------------------------------------------------------------
   29-   48 (20.65/ 8.85)	PLSSQFRPVvptqqgQHFVP
   68-   79 (17.43/ 6.25)	P.AVQNQQM......Q.FSQ
   80-   91 (22.24/10.12)	PM.QQF.PP......RPNQP
  125-  138 (19.99/ 8.31)	PLNSHMPGV......GVPGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.08|      12|      16|     350|     362|       4
---------------------------------------------------------------------------
  350-  361 (23.18/ 8.78)	PVANPSPTSVSG
  366-  377 (18.90/ 7.07)	PVAQSAAMSATG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     127.59|      30|     239|     474|     506|       5
---------------------------------------------------------------------------
  474-  498 (35.84/17.19)	................KSLLESANVQSDWTWEQTMREIIND
  671-  692 (21.76/ 7.37)	...................LRRAERKNRDAFRKLMEEHVAD
  693-  732 (31.30/11.23)	GTLtaKTywrdyclkvKELPQYLAVASN.TSGSTPKDLFED
  742-  775 (38.69/24.44)	HEH..KT...rikeamKT.GKVTMVYS.WTFEDFKAAISED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.13|      26|      34|     792|     825|       6
---------------------------------------------------------------------------
  516-  542 (35.69/12.13)	EYLGQRKK.LEAEERRMRQKKArEEF.TK
  792-  817 (39.60/14.82)	ELLERAKE.KEEKEAKKRQRLA.DDF.TR
  836-  863 (31.84/18.57)	PLFEESQEyRSIAEESFRREIF.EEYiTH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.26|      12|      21|     384|     397|       7
---------------------------------------------------------------------------
  384-  396 (17.26/16.18)	SVTPVPAVpSRGS
  402-  413 (20.00/ 6.62)	SVGATTAV.TRSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02915 with Med35 domain of Kingdom Viridiplantae
Unable to open file!