<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02915

Description Uncharacterized protein
SequenceMANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQVPSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQVQYGQTNRPLTSEPPQSHQSAPPLNSHMPGVGVPGVPPSSYGFAPSSFGLPQNNVSAPSQFHPISQVHAPVAPVAGQPWLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKEREYAAEEKRRNIAEYRKFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLLIFQDYIHDLEKEEEEKKKMQKEQLRRAERKNRDAFRKLMEEHVADGTLTAKTYWRDYCLKVKELPQYLAVASNTSGSTPKDLFEDVAEELDKQYHEHKTRIKEAMKTGKVTMVYSWTFEDFKAAISEDVGSSSISDINLKLVYDELLERAKEKEEKEAKKRQRLADDFTRLLHTYKEITASSDWEESKPLFEESQEYRSIAEESFRREIFEEYITHLQEKAKEKERKREEEKAKKEKDREEKDKRKEKEKERKEKEREREREKGKDRSKKDETDSENLDISDSHGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ
Length1026
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-1.156
Instability index59.38
Isoelectric point6.75
Molecular weight116507.71
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02915
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     254.09|      36|      38|     216|     251|       1
---------------------------------------------------------------------------
  117-  156 (26.87/10.31)	..P.....QS.....HQSAPplnshmpgvgvpgvpPSSYGFA....PSSFGLPQNN
  163-  191 (39.59/19.08)	FHP.....ISQVHAPVAPVA...............GQPWL.......STGNQNVSL
  192-  213 (35.03/15.94)	ATP..........TQHTS........................QQPPPSSADTNANV
  216-  251 (64.16/36.00)	LTP.....QSSDWQEHTSAD...............GRRYYYNKRTRQSSWEKPLEL
  252-  292 (52.36/27.88)	MTPieradASTVWKEFTTPE...............GRKYYHNKVTKESKWTIPEEL
  297-  329 (36.08/16.66)	EQA.....QAASSQGTPSGS...............GVAPQAPVATAVSAAETP...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     222.86|      38|      38|     866|     903|       2
---------------------------------------------------------------------------
  567-  595 (28.81/ 8.99)	......ERF..............KAVERARD.REDL.FE...NyivD...........................LERK.ERE
  596-  669 (24.26/ 6.49)	YAAEEKRRNiaeyrkflescdfiKANSQWRK.VQDRlED.......DERcsrlekidrllifqdyihdleKEEEEKKKmQKE
  866-  903 (59.23/25.67)	EKAKEKERK..............REEEKAKK.EKDR.EE...K...DKR.....................KEKEKERK.EKE
  904-  942 (37.30/13.65)	...RERERE..............KGKDRSKKdETDS.ENldiS...DSH.....................GHKEEKKK.EKE
  943-  977 (41.31/15.84)	KDRKHRKRH..............AADDGSSD.KDDR.EE...S...KKS.....................RRHGSDRK....
  978- 1008 (31.95/10.71)	.....KSRK..............HAHSPDSD.SESR.HR...K...HKR.....................DHRDGSRR.N..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      80.32|      14|      17|      24|      37|       3
---------------------------------------------------------------------------
   29-   48 (20.65/ 8.85)	PLSSQFRPVvptqqgQHFVP
   68-   79 (17.43/ 6.25)	P.AVQNQQM......Q.FSQ
   80-   91 (22.24/10.12)	PM.QQF.PP......RPNQP
  125-  138 (19.99/ 8.31)	PLNSHMPGV......GVPGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.08|      12|      16|     350|     362|       4
---------------------------------------------------------------------------
  350-  361 (23.18/ 8.78)	PVANPSPTSVSG
  366-  377 (18.90/ 7.07)	PVAQSAAMSATG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     127.59|      30|     239|     474|     506|       5
---------------------------------------------------------------------------
  474-  498 (35.84/17.19)	................KSLLESANVQSDWTWEQTMREIIND
  671-  692 (21.76/ 7.37)	...................LRRAERKNRDAFRKLMEEHVAD
  693-  732 (31.30/11.23)	GTLtaKTywrdyclkvKELPQYLAVASN.TSGSTPKDLFED
  742-  775 (38.69/24.44)	HEH..KT...rikeamKT.GKVTMVYS.WTFEDFKAAISED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.13|      26|      34|     792|     825|       6
---------------------------------------------------------------------------
  516-  542 (35.69/12.13)	EYLGQRKK.LEAEERRMRQKKArEEF.TK
  792-  817 (39.60/14.82)	ELLERAKE.KEEKEAKKRQRLA.DDF.TR
  836-  863 (31.84/18.57)	PLFEESQEyRSIAEESFRREIF.EEYiTH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.26|      12|      21|     384|     397|       7
---------------------------------------------------------------------------
  384-  396 (17.26/16.18)	SVTPVPAVpSRGS
  402-  413 (20.00/ 6.62)	SVGATTAV.TRSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02915 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LQEKAKEKERKREEEKAKKEKDREEKDKRKEKEKERKEKEREREREKGKDRSKKDETDSENLDISDSHGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ
2) MANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQVPSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQVQYGQTNRPLTSEPPQSHQSAPPLNSHMPGVGVPGVPPSSYGFAPSSFGLPQNNVSAPSQFHPISQVHAPVAPVAGQPWLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRT
3) VQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVY
4) WEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTK
5) WTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSAT
864
1
378
245
286
1026
240
463
282
376










Molecular Recognition Features






MoRF SequenceStartStop




1) EKKKEKEKDRKHRKRHAADD
2) GYEELED
3) KDDREESKKSRRH
4) RHRKHKRDHR
5) RKKSRKH
936
1010
960
993
976
955
1016
972
1002
982