<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02914

Description Uncharacterized protein
SequenceMYNSFYFVYICSIFICLDALLATSLVITLTDMRADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKEREYAAEEKRRNIAEYRKFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLLIFQDYIHDLEKEEEEKKKMQKEQLRRAERKNRDAFRKLMEEHVADGTLTAKTYWRDYCLKVKELPQYLAVASNTSGSTPKDLFEDVAEELDKQYHEHKTRIKEAMKTGKVTMVYSWTFEDFKAAISEDVGSSSISDINLKLVYDELLERAKEKEEKEAKKRQRLADDFTRLLHTYKEITASSDWEESKPLFEESQEYRSIAEESFRREIFEEYITHLQEKAKEKERKREEEKAKKEKDREEKDKRKEKEKERKEKEREREREKGKDRSKKDETDSENLDISDSHGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ
Length802
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-1.164
Instability index51.92
Isoelectric point6.26
Molecular weight92596.95
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02914
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     283.28|      38|      38|     642|     679|       1
---------------------------------------------------------------------------
  298-  330 (31.58/ 8.88)	KK..........LE....AEERRMRQKKA.......REE...FTKM.....LE......ESKELTSSM
  333-  371 (37.55/11.89)	SK..........AQslfeNDERFKAVERA....R.DRED...LFEN.....YI......VDLERKERE
  372-  410 (35.70/10.95)	YA..........AE....EKRRNIAEYRKFL.EScDFIK...ANSQ.....WR......KVQDRLEDD
  417-  463 (30.92/ 8.54)	EKidrllifqdyIH....DLE.KEEEEKKKM.QK.EQLR...RAER.....KN......RDAFRKLME
  571-  615 (26.37/ 6.24)	ER..........AK....EKE....EKEAKK.RQ.RLAD...DFTRllhtyKEitassdWEESKPLFE
  642-  679 (59.26/22.87)	EK..........AK....EKERKREEEKAKK.EK.DREE...KDKR.....KE......KEKERKEKE
  680-  718 (27.94/ 7.03)	.............R....EREREKGKDRSKKdET.DSENldiSDSH.....GH......KEEKKKEKE
  719-  753 (33.95/10.07)	KD..........RK....HRKRHAADDGSSD.KD.DREE...SKKS.....RR......HGSDRK...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      71.52|      12|      15|      94|     105|       2
---------------------------------------------------------------------------
   94-  105 (21.76/12.62)	PVATAVSAAETP
  110-  121 (16.86/ 8.27)	PVSSNTLQDSSP
  130-  138 (16.02/ 7.53)	PSPTSVSG...P
  142-  151 (16.88/ 8.29)	PVAQ..SAAMSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.38|      27|      46|     493|     519|       4
---------------------------------------------------------------------------
  493-  519 (46.09/31.03)	VASNTSGSTPKDLFEDVAE......ELDKQYHE
  536-  568 (39.29/25.33)	VYSWTFEDFKAAISEDVGSssisdiNLKLVYDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.69|      15|      15|     754|     768|       5
---------------------------------------------------------------------------
  754-  768 (25.86/14.85)	KSRKHAHSPDSDSES
  771-  785 (26.82/15.68)	RKHKRDHRDGSRRNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.32|      31|      38|     212|     249|       6
---------------------------------------------------------------------------
  180-  210 (50.15/30.49)	GATTA....VTRSSETTATQDTMHFADGASAQDIE
  215-  249 (46.17/33.02)	GMATAgkvnMTPVEEKVPDDEPLVYANKLEAKNAF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02914 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LQEKAKEKERKREEEKAKKEKDREEKDKRKEKEKERKEKEREREREKGKDRSKKDETDSENLDISDSHGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ
2) REQAQAASSQGTPSGSGVAPQAPVATAVSAAET
3) TTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSAT
4) VQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVY
640
72
106
154
802
104
152
239










Molecular Recognition Features






MoRF SequenceStartStop




1) DKDDREESKKSRRHG
2) EKKKEKEKDRKHRKRHAADDG
3) KKSRKHAH
4) NSGYEELEDGELGEDGEIQ
5) RHRKHKRDHR
735
712
753
784
769
749
732
760
802
778