<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02914

Description Uncharacterized protein
SequenceMYNSFYFVYICSIFICLDALLATSLVITLTDMRADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKEREYAAEEKRRNIAEYRKFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLLIFQDYIHDLEKEEEEKKKMQKEQLRRAERKNRDAFRKLMEEHVADGTLTAKTYWRDYCLKVKELPQYLAVASNTSGSTPKDLFEDVAEELDKQYHEHKTRIKEAMKTGKVTMVYSWTFEDFKAAISEDVGSSSISDINLKLVYDELLERAKEKEEKEAKKRQRLADDFTRLLHTYKEITASSDWEESKPLFEESQEYRSIAEESFRREIFEEYITHLQEKAKEKERKREEEKAKKEKDREEKDKRKEKEKERKEKEREREREKGKDRSKKDETDSENLDISDSHGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ
Length802
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-1.164
Instability index51.92
Isoelectric point6.26
Molecular weight92596.95
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02914
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     283.28|      38|      38|     642|     679|       1
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  298-  330 (31.58/ 8.88)	KK..........LE....AEERRMRQKKA.......REE...FTKM.....LE......ESKELTSSM
  333-  371 (37.55/11.89)	SK..........AQslfeNDERFKAVERA....R.DRED...LFEN.....YI......VDLERKERE
  372-  410 (35.70/10.95)	YA..........AE....EKRRNIAEYRKFL.EScDFIK...ANSQ.....WR......KVQDRLEDD
  417-  463 (30.92/ 8.54)	EKidrllifqdyIH....DLE.KEEEEKKKM.QK.EQLR...RAER.....KN......RDAFRKLME
  571-  615 (26.37/ 6.24)	ER..........AK....EKE....EKEAKK.RQ.RLAD...DFTRllhtyKEitassdWEESKPLFE
  642-  679 (59.26/22.87)	EK..........AK....EKERKREEEKAKK.EK.DREE...KDKR.....KE......KEKERKEKE
  680-  718 (27.94/ 7.03)	.............R....EREREKGKDRSKKdET.DSENldiSDSH.....GH......KEEKKKEKE
  719-  753 (33.95/10.07)	KD..........RK....HRKRHAADDGSSD.KD.DREE...SKKS.....RR......HGSDRK...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      71.52|      12|      15|      94|     105|       2
---------------------------------------------------------------------------
   94-  105 (21.76/12.62)	PVATAVSAAETP
  110-  121 (16.86/ 8.27)	PVSSNTLQDSSP
  130-  138 (16.02/ 7.53)	PSPTSVSG...P
  142-  151 (16.88/ 8.29)	PVAQ..SAAMSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.38|      27|      46|     493|     519|       4
---------------------------------------------------------------------------
  493-  519 (46.09/31.03)	VASNTSGSTPKDLFEDVAE......ELDKQYHE
  536-  568 (39.29/25.33)	VYSWTFEDFKAAISEDVGSssisdiNLKLVYDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.69|      15|      15|     754|     768|       5
---------------------------------------------------------------------------
  754-  768 (25.86/14.85)	KSRKHAHSPDSDSES
  771-  785 (26.82/15.68)	RKHKRDHRDGSRRNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.32|      31|      38|     212|     249|       6
---------------------------------------------------------------------------
  180-  210 (50.15/30.49)	GATTA....VTRSSETTATQDTMHFADGASAQDIE
  215-  249 (46.17/33.02)	GMATAgkvnMTPVEEKVPDDEPLVYANKLEAKNAF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02914 with Med35 domain of Kingdom Viridiplantae
Unable to open file!