<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02911

Description Uncharacterized protein
SequenceMAEKQLIVAVEGTAAMGPYWHIVVSDYLDKIIRCFCSSELTGQKNSTSNVEFSLVTFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMFPIASNGNQTPQNVDGQRHCILVAASNPYPLPTPVYRPQIQNLEQVENSEAQTESCLSDAETVARSFAQCSVSLSVICPKQLAKLKAIYSAGKRNPRAADPPVDNVKNSQFLVLISENFMEGRAALSRSGVPSLATNQSPVKMDMASVTSVMGPSPSSVNGSMVGKLPVSVGNVATATVKVEPTTITSMATGPAFSHVPSVPRVPSQAIPTLQTSSPLTNTQEGMTSGDNMQELKPSVSGMTQPSRPVPPAAANVNILNNLSQARVMSSAALTGGTSIGLQSMGQTPVAMHMSNMISSGMASSVPPAHTVLSSGQPTMTSLTGSGALTGTAQVPPNSGLSTFSSASSNVAGNSNIGISQPTGNVQGAVNIGQSVPGMSQGNHSGTQMMQSGVGMSQNMSALGQSTVSSGNGTMIPTPGMSQQVQSGMQTLGVSNSSAASMPLSQQTSSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPQQTLLLSVSDKACRLIGMLFPGDMVVFKPQMSSQQQLQLQQQQQQQQMQPQLQQQQQQQNPQLQQQQLPHLQQQQQLPQLQQQQQQLPQLQQQQLSQLQQQQQQQQQQQQQLQQQSQHPQMQQQQMVGSGMGPAYVQGPGRSQLVSQGQVPSQAPPNMPGGGFMS
Length822
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.04
Grand average of hydropathy-0.328
Instability index65.20
Isoelectric point8.60
Molecular weight87647.12
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02911
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.01|      15|      16|     718|     733|       1
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  707-  724 (30.74/10.46)	PQLQQQQQqqnPQLQQQQ
  753-  767 (31.27/ 7.29)	SQLQQQQQ...QQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     196.67|      38|      39|     464|     501|       2
---------------------------------------------------------------------------
  281-  318 (39.43/12.17)	GNVATAtVKVePTTI.T...SMATG.PAFSHVPSVPR......VP..SQAI
  358-  392 (29.94/ 7.46)	PPAAAN.VNI....L.N...NLSQ.....ARVMSSAAltggtsIG.L.QSM
  393-  426 (43.24/14.06)	GQTPVA.MHM.SNMIsS...GMASSVPPAHTVLSSG............QPT
  434-  470 (28.87/ 6.93)	GALTGT.AQ.....V.PpnsGLSTFSSAS.....SNV.agnsnIG.ISQPT
  471-  505 (55.19/19.99)	GNVQGA.VNI.GQSV.P...GMSQGNHSGTQMMQSGV........gMSQ..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.29|      17|      29|     736|     752|       3
---------------------------------------------------------------------------
  725-  743 (27.10/ 7.97)	LPHLqQQQQL..............pQLQQQQQQ
  744-  775 (25.18/ 6.86)	LPQL.QQQQLsqlqqqqqqqqqqqqQLQQQSQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     157.33|      38|      76|     241|     278|       4
---------------------------------------------------------------------------
  240-  277 (65.01/27.07)	V........................................PSLATNQSPVKMDMASVTSV..MGPSPSSVNGSMVGKLP
  278-  356 (42.66/15.32)	VsvgnvatatvkvepttitsmatgpafshvpsvprvpsqaiPTLQTS.SPLTNTQEGMTSGdnMQELKPSVSGMTQPSRP
  523-  550 (49.66/19.00)	I........................................PTPGMSQQ........VQSG..MQTL..GVSNSSAASMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.71|      17|      48|     629|     646|       5
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  629-  646 (27.17/20.96)	DFLVFRA.MNQHGFLgQLQ
  680-  697 (26.54/14.48)	DMVVFKPqMSSQQQL.QLQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02911 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSRSGVPSLATNQSPVKMDMASVTSVMGPSPSSVNGSMVG
2) LTGGTSIGLQSMGQTPVAMHMSNMISSGMASSVPPAHTVLSSGQPTMTSLTGSGALTGTAQVPPNSGLSTFSSA
3) QQQQLQQQSQHPQMQQQQMVGSGMGPAYVQGPGRSQLVSQGQVPSQAPPNMPGGGFMS
4) TITSMATGPAFSHVPSVPRVPSQAIPTLQTSSPLTNTQEGMTSGDNMQELKPSVSGMTQPSRPVPPAAANVNILN
5) VAGNSNIGISQPTGNVQGAVNIGQSVPGMSQGNHSGTQMMQSGVGMSQNMSALGQSTVSSGNGTMIPTPGMSQQVQSGMQTLGVSNSSAASMPLSQQT
235
381
765
294
458
274
454
822
368
555










Molecular Recognition Features






MoRF SequenceStartStop




1) GPAYV
789
793