<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02908

Description Uncharacterized protein
SequenceMDTNNWRPTPPSGEPSMDSGDWRTTLQPDSRQRIVNKIMDTLKRHLPFSGQDGLSELRKIAVRFEEKIFTAASSQTDYLRRISLKMLTMETKSQNTMPNTGNNSKPPDPGSQGMQNQVHSQGQSVPIPLQCNQSQAHQQLLPQSVPNNMASAGVQSSAGLQSGMPPVSGLSQNPISNVVGQNSNIQNMSGILQNSMGQGMPSNIFANQQRQMQGRQQVVPQQQQQQLYHQQLQQTLMKQKIQQGNLQSSLLQSHMQQQQQQNLLPPTQLQSSQQSGMQTSSIMQPSALQSTLPGLQQNQQSSLQQSTQSMLQQHQQSVLRQQQQPQQTTSAGIHQQQTPMTQQSMMPQQQQQQHMMGQQANAANIPQNQLIGQQNSIADMQQQRLLGQSSNLQQQQQQQQLMAQQNNLSNMHQQQLGPQSNISGLQQQQQQLVGTQSGNSSMQTNQQSLHMLSQPKVALQQTQQTAPNLLPTQGQTSQQPQQQQQLMSQMQSQPTQLQQQLGLQQQPNQVQQNMQQRLQASGQTSSSLLQSQNLIDQQKQLYQSQRAVPETSSTSLDSTAQTGHSNGGDWQEDVYQKIKAMKETYFSELNEMHQKISAKLLQHDSFPQQPKSEQLEKLKIFKTMLERILHFLTVSKANIVPAFKDKLSSYEKQILNFINTNRPRKPVSALQQGQLPPPHMHSMQQPQPQSNQTQSHDNQMNPQLQSINLQGSMPTMQPNNMTSLQHNTLSSLPGVSTAQQTMLNSLQPGSNLDPGQGNALGSMQQVAPGSLQQNPASTSQQANLNSLSSQSGLSVLQQNMNPLQSNSNMLQHQHMKQQQEQQILQSQKYKQQRQMQHQIMQQKHQLMQQQQQQAKQQLPTQLQAHQMPQLHQMNDVNDMKQGISVKPGVFQQHLPAGQRQTYTHQQLKPGAQFPISSPQLHPAASPQMPQHSSPQIDQQSLLPSISKTGTPLQSANSPFVVPSPSTPLAPSPMPGESEKPAPGTSSLSNAANIGHQQGTGVQAGSQSLAIGTPGISASPLLAEFTDGTHANVLTTVSSKSNITEQPLERLMKAVKSMSPTALCASVSDIGSVVSMTDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGMNGTKKMRRHTSAMPLNVVSSVGSINDSFKQLTGSETSDLESTATSTVKKPRIEANHALLEEIREINQQLIDTVVDISDEDVDPGTVATAAEGGEGTVVKCSFNAVALTSNLKSQYMSAQMSPIQPLRLLVPTNYPNCSPVLLDKFPVEVSKEYEDLSVKAKSKFSISLRTLSQPMSLGEIARTWDVCARAIISEHAQQSGGGSFSSKYGTWENCSMAA
Length1333
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.03
Grand average of hydropathy-0.769
Instability index73.84
Isoelectric point9.20
Molecular weight146520.52
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02908
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     277.23|      37|      37|     221|     257|       1
---------------------------------------------------------------------------
  221-  257 (71.77/21.29)	QQQQQQLYHQQ....LQQTLMKQKIQQGNLQSSLLQSHMQQ
  258-  285 (43.58/ 9.22)	QQQQNLLPPTQ....LQSS......QQSGMQTS...SIMQP
  326-  358 (40.52/ 7.90)	QQTTSAGIHQQqtpmTQQSMMPQQQQQ........QHMMGQ
  364-  394 (37.76/ 6.72)	NIPQNQLIGQQ....NSIADMQQQRLLG..QSSNL....QQ
  395-  425 (45.66/10.11)	QQQQQQLMAQQ....NNLSNMHQ..QQLGPQSNI..SG..L
  664-  696 (37.94/ 6.80)	RKPVSALQQGQ....LPPPHM.HSMQQPQPQSNQTQSH...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     211.59|      36|      36|     801|     836|       6
---------------------------------------------------------------------------
  504-  535 (45.84/ 8.88)	QQQP...N...QV....Q.QNMQQRL........Q......ASGQTSSSLLQSQNLI
  786-  816 (40.50/ 6.90)	SLSS...QsglSV...LQ.QNM...................NPLQSNSNMLQHQHMK
  817-  848 (47.23/ 9.39)	QQQE...Q...QI...LQSQKYKQQRQM......Q.....hQIMQQ.....KHQLMQ
  849-  895 (39.65/ 6.59)	QQQQqakQ...QLptqLQAHQMPQLHQMndvndmK......QGISVKPGVFQ.QHLP
  896-  934 (38.38/ 6.12)	AGQR...Q...T....YTHQQLKPGAQF......PisspqlHPAAS.PQMPQHSS.P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.37|      27|     105|     427|     454|       8
---------------------------------------------------------------------------
  156-  186 (29.44/ 7.83)	SSAGLQS.........GMppvSGLSQNPIS.NVVGQ......NSNiQ
  431-  464 (38.73/16.53)	QLVGTQS.........GN...SSMQTNQQSlHMLSQpkvalqQTQ.Q
  751-  784 (34.20/10.57)	NLDPGQGnalgsmqqvAP...GSLQQNPAS...TSQ......QAN.L
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.77|      16|      16|    1236|    1251|      10
---------------------------------------------------------------------------
 1236- 1251 (29.02/19.01)	SPI..QPLRLLVPTNYPN
 1253- 1270 (22.75/13.15)	SPVllDKFPVEVSKEYED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     339.78|     102|     112|     974|    1085|      11
---------------------------------------------------------------------------
  968- 1065 (132.16/108.32)	.............LAPS.PMPGEsEKP..APG......TSSLSNAANIGHQQ.GTGVQAGSQSLAIGTPGISASPLlAEFTDGTHANV.LTTVSSKSNITEQPLERLMKAVKSmsptaLCAS
 1066- 1149 (108.97/82.07)	VSDIGSVVSMTdrIAGSaPGNGS..RA..AVGedlvamTKCRLQARNFITQD.G...MNGTKKMRRHT...SAMPL..........NV.VSSVGS...........INDSFKQ.....LTGS
 1151- 1235 (98.66/62.17)	TSDLESTATST............vKKPriEAN......HALLEEIREINQQLiDTVVDISDEDV...DPGTVATA..AEGGEGTVVKCsFNAVALTSNLKSQYMSAQM..............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.24|      16|     105|     590|     610|      12
---------------------------------------------------------------------------
  572-  587 (27.74/ 9.74)	EDVYQKIKA..MKETYFS
  590-  607 (24.50/21.67)	NEMHQKISAklLQHDSFP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      28.17|      10|      20|      57|      70|      16
---------------------------------------------------------------------------
   57-   70 (11.14/21.65)	LRKIAVrfeeKIFT
   79-   88 (17.03/12.94)	LRRISL....KMLT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.51|      19|     559|     133|     151|      20
---------------------------------------------------------------------------
  133-  151 (35.57/19.31)	QSQAHQQLLPQSVPNNMAS
  705-  723 (36.94/20.44)	QSINLQGSMPTMQPNNMTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.93|      14|      28|     616|     632|      22
---------------------------------------------------------------------------
  616-  632 (18.33/24.08)	EKLKIFKtmlERILHFL
  645-  658 (23.60/18.05)	DKLSSYE...KQILNFI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02908 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KQLYQSQRAVPETSSTSLDSTAQTGHSNGGDWQEDV
2) MDTNNWRPTPPSGEPSMDSGDWRTTLQPDSRQRIVNKIMDTLKRHLPFSGQDGLSEL
3) NRPRKPVSALQQGQLPPPHMHSMQQPQPQSNQTQSHDNQMNPQLQSINLQGSMPTMQPNNMTSLQHNTLSSLPGVSTAQQTMLNSLQPGSNLDPGQGNALGSMQQVAPGSLQQNPASTSQQANLNSLSSQSGLSVLQQNMNPLQSNSNMLQHQHMKQQQEQQILQSQKYKQQRQMQHQIMQQKHQLMQQQQQQAKQQLPTQLQAHQMPQLHQMNDVNDMKQGISVKPGVFQQHLPAGQRQTYTHQQLKPGAQFPISSPQLHPAASPQMPQHSSPQIDQQSLLPSISKTGTPLQSANSPFVVPSPSTPLAPSPMPGESEKPAPGTSSLSNAANIGHQQGTGVQAGSQSLAI
4) QGNLQSSLLQSHMQQQQQQNLLPPTQLQSSQQSGMQTSSIMQPSALQSTLPGLQQNQQSSLQQSTQSMLQQHQQSVLRQQQQPQQTTSAGIHQQQTPMTQQSMMPQQQQQQHMMGQQANAANIPQNQLIGQQNSIADMQQQRLLGQSSNLQQQQQQQQLMAQQNNLSNMHQQQLGPQSNISGLQQQQQQLVGTQSGNSSMQTNQQSLHMLSQPKVALQQTQQTAPNLLPTQGQTSQQPQQQQQLMSQMQSQPTQLQQQLGLQQQPNQVQQNMQQRLQASGQTSSSLLQ
5) RRISLKMLTMETKSQNTMPNTGNNSKPPDPGSQGMQNQVHSQGQSVPIPLQCNQSQAHQQLLPQSVPNNMASAGVQSSAGLQSGMPPVSGLSQNPISNVVGQNSNIQNMSGILQNSMGQGMPSNIFANQQRQMQGRQQVVPQQQQ
539
1
661
243
80
574
57
1010
530
224










Molecular Recognition Features






MoRF SequenceStartStop




NANANA