<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02904

Description Uncharacterized protein
SequenceMAVSVQAASPVWESVLELTKSAQYKNRDPLLWAVQLSSSLNSAGISLPSIDLAHLLVSHICWDNHVPITWKFLEKALTVKFVPSMLVLALLSTRVIPNRKFHPAAYRLYMELLRRHAFSLQCQINGPNYQKIMKSVGDVLHLSQIFGVQVSEPGLLLVEFVFSIVLQLLDASLDDEGLLELTPEKRSIWPTVTQDMEIDSVDNFNEKRSEHHDVLCKGNTTMAIEIIGEFLQNKVTSRILFLARRNMSSHWGTFLQQLRVLAAKSVALRNAKHITPEAFLNLTSDMHKVVSRKCKTISQQELNAVIGSGSLTTSSGQYHGTSPSAHWLPIDLFLEDAMDGSQVAATGAVESLTGLVKALQAVNGTTWHDTFLGLWIAALRLVQRERDISEGPVPRLDTCLCMLLSITPLVVANIVEEEESELIDGCDCSPTNQIKEKQSPGRCRQDLICSLQMLGDYEALLTPPQPVRSVANQAAAKAIMFVSGLTVGNGYHECMSINDMPMNCSGNMRHLIVEACIARNLLDTSAYVWPGYVNARANIPRNVPVQVIGWSSLMKGSPLTPTLINALIATPASSLAEIEKIYEIATKGSDDEKISAASILCGASLVRGWNIQEHTILFITSLLSPPVPADYSGSESHLISYGPFFNILLVGISPVDCVQIFSLHGLVPLLAGTLMPLCEVFGSTSPNVSWTLPTGEELTSHAVFSNAFTLLLRLWRFNHPPFENAMGDATPVGSQLTPEYLLLVRNSKLSDFGKSPKDHMKLKRMSKNLNISLELIFMDSFPKLKSWYRQHQECIASTLTGLVQGTTVHQIVDALLNMMFRKISRGGQSLTSTTSGSSSSPASGAEDVSMRLKVPAWDILEGAPYVLDAALTACAHGRLLPRDLATGLKDLADLLPATLATIVSYLSAEVTRGIWKPVFMNGTDWPSPSANLFMVEQQIKKIIAATGVDIPSLAIGGSSPAMLPLPLAALVSLTITYKLDKASERFIVLIGPALSSLAESCPWPCMPIIASLWAQKVKRWSDFLVFSASRTVFHHNIDAVVQLLRSCFTSIPGLSPSTIYSNGGVGALLGHGFGSHFSGGMSAVAPGILYLRVHRSVRNIMFMTEEIVSLLMSSVRDIANSGLFRENLEKLKKAKFGLRYRQVSLGAATTRVRFAASLGASLVWLSGGLSLVQLLIQETLPSWFLSAHTPDQDGGEPGGLVAMLSGYALAYFVVLCGTLAWGVDSSSPTSKRRPKVLGAHLEFLASAIDGKISLGCEYATWHAYVTGFVSLMVGCTKKWVLDVNVDVLRRLSNGLRQWNEEELAIALLGLGGAEATASAAELIIEIGP
Length1328
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy0.195
Instability index46.50
Isoelectric point6.64
Molecular weight144481.73
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02904
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.75|      44|     160|     919|    1024|       1
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   44-   92 (57.99/10.28)	GISLPSI.....DLAhLLVSHICWDNHVPITWKfLEKAlTVKFVpsMLVLALLS
  947-  995 (68.76/119.67)	GVDIPSLaiggsSPA.MLPLPLAALVSLTITYK.LDKA.SERFI..VLIGPALS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     281.60|      90|     171|    1047|    1148|       2
---------------------------------------------------------------------------
 1047- 1148 (136.04/117.84)	CFTSIPGL...SPSTIYSNGGVGALLgHGFGSHFSGGMSAvapGILYLRVHRSVRNimfmteeIVSLLMSS............VRDIANsGLFRENLEKLKKAKFGLRYRQVSLGAA
 1216- 1320 (145.56/93.90)	CGTLAWGVdssSPTSKRRPKVLGAHL.EFLASAIDGKISL...GCEYATWHAYVTG.......FVSLMVGCtkkwvldvnvdvLRRLSN.GLRQWNEEELAIALLGLGGAEATASAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     287.16|      91|     172|     556|     653|       3
---------------------------------------------------------------------------
  556-  653 (136.68/114.59)	GSPLTPTLINALIATPASSLAEIEKIYEIATKGSDDEKISAASILCGA.SLVRGWNIQEHTilFITSLLSPPVpadySGSESHLIsYGPFFNILLVGIS
  733-  824 (150.48/103.75)	GSQLTPEYLLLVRNSKLSDFGKSPKDHMKLKRMSKNLNISLELIFMDSfPKLKSWYRQHQE..CIASTLTGLV....QGTTVHQI.VDALLNMMFRKIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.46|      21|     172|     304|     331|       4
---------------------------------------------------------------------------
  309-  329 (41.27/30.99)	GSLTTSSGQYHGTSPSAHW.LP
  672-  693 (37.19/11.42)	GTLMPLCEVFGSTSPNVSWtLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.24|      23|     469|     379|     401|       6
---------------------------------------------------------------------------
  379-  401 (41.66/23.30)	LRLVQRERDISEGPVPRLDTCL..C
  850-  874 (35.58/18.87)	MRLKVPAWDILEGAPYVLDAALtaC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.99|      35|     420|     482|     519|       7
---------------------------------------------------------------------------
  482-  519 (57.31/47.28)	VSGLT..VGNGYHECMSIN..DMPmNCSGNMrhLIVEACIAR
  903-  941 (56.68/34.99)	VSYLSaeVTRGIWKPVFMNgtDWP.SPSANL..FMVEQQIKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.29|      19|     587|     117|     138|      13
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  117-  138 (32.30/29.96)	AFSLQCQI...NGPNYQKIMksvGD
  707-  728 (30.98/19.91)	AFTLLLRLwrfNHPPFENAM...GD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02904 with Med33 domain of Kingdom Viridiplantae
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