<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02896

Description Uncharacterized protein
SequenceMQRYHAPSCTSAVNNSAIGGASVRDTPRADSSSLPPNFSLNSRRQSQLAPYKLKCDKEHLNSRLGPPDFHPQTQNCPEETLTRENVQHGYKDTIDGLEDSKEISLTQVQAFTKPVVLKCRDAIRKCLRAINESRAQKRKAGQVYGVPLSGSLLSKPGVFPEQRPCNEDFRKKWIEGLSLQHKPLCSLADQVPLGYKKRPLIEVLIRNNVPLLKATWFIKVTYLNQVRPGSAISSGAPDKTQLSRTELWTKDVIDYLQYLLDEFFSRNNSHSTQHGRDRLPQIHYAGSLQHRSDLAPAVIDGEEPSLHFKWWYVVRLLQWHHAEGLVLPSLIIDWVLNQLQEKDLLEILQLLLPIIYGVLETIILCQTYVRNLVGVAIRFIREPSPGGSDLVDNSRRAYTISALVEMLRYLIQATPDTFVALDCFPLPTCVLSHTPSDGGFLSKPSDDAAKKNYTADAYAVRGKGFDSQYQSLSFNHVVSTVEKRADNLAKGATAGYPSQSVAKAVQTLDKALLQGDVIDAYKHIFNDLYDGAVGEGWVAEVSPSLRSSLKWLQTVNLSLICSVFFLCEWATCDYRDFRTAPPSDVKFTGSKDFSQIYLAIQLLKLKMKELQKKLKKGRASRKNTSQQNSYSSKDLLGDTHEAKSNGKGLNGRRRNFSDIFDSPGPLHDIIVCWIDQHEGHKGEGSKRLQLFMLELIRSGIFYPQAYVRQLLVSGIIDTNGPMADLNRRKRHQRILKQLPGQFMLNALEEARIAEGSELLEAINVYSNERLLVLQELFFDSYNNTNNSHALAKKLNCRPTLGRDVDSQVSCDKRRTVQASKTFRREVGLEELKASISVLLQFPSSSFCSADSGEDESQGSIKRSIGSTHSKMDSVEGTPGCEDCKRVKRLKLSEDETSCLKVYSPIPSDDDDTWWVRKGPKNLEGSKVDPLLKSTKQASRGRQKPVRKTQSLAQLAAARIEDSQGASTSHVCDNKISCPHHRTEVENLKPVDGIRTTHHADIISIGRGLKQLRFVEKRVVTIWLLSVVRQLVEESEKSVPKASQYGRPFVAADEKSPLRWKLGEDELSAILYLLDVSCDSASAVKFLLWLLPKAISNPSPAIHGGRNILMVPRNVENYACEVGEAYLLSSLRRYENILIAADLVPEALSATMRHVASFMATNGRITGSGALVFACYLLRRYGSIASVIEWEKNFKETCDKRLLSELESGRTEGEFGFPHGVPAGTEDPDDYCRQRINVGRLSRAGVSMRDMVQRRIDDVLHYILGKERKHFAANTQRSPATEKGDDDYQVAQQIIMGLMDCFRQTGGAFQEGDPGLVSSAVSAIVSNVGPTLAKIPDFTSGSTYSNYQPPMNYLNFAKRLLHIHLICLCLLKEALGERKSQAFEIALATEAFSALAVAFAPAKSSRGQLLSPDSLDSHANISNDNSHSSAKATLGRTTKMAAAVSALVIGAIIHGVISLERMVSVLRLKEGLDVVQFVRSTKTSSNGNARSVGAFKVDNSVEVYVHLFRLFVGNCRTVCDGLVLELLGEQSVLALSRMQRLLPINLVFPPAYAIFAFMIWKPFILNSNTARSEDIQQLYQSLTVAIGDAIKHRPFRDVCMRDTRGFYDIVAADTTDAEFAAMLELNGLDMHLKSMAFVPLRARLFLNAIIDCKMPNSAFTQDDGNRVSGHSESKALRAETSKLLDKLVCALDTIQPAKFHWQWVELRLLLNEQALIDKIENHDMSIVDAIRSSSPSSERATPSESEKVFIEIILTRLLVRPDAAPLFSEVVHLFGRSLEDSMLMQAKWFLGGLDVLLGRKTVRQRLSNIAENKNLSTKSQFWKPWGWSYSGVDPVTNSGEKRKSEVTSLEEGEVIEEGMESKGCVKGSTQVDIEGSGINQQHVTEKAFIELVIPCIDQSSADSHNTFASDLIKQFNTIEQQINSVTRGVSKQTGTASSGIEGPTNKINNRKGIRGGSPGLAKRTPAPVESAPPPSPAALRASMSLRLQFIVRLLPIICADGEPSARSMRNMLASVILRLLGSRVVHEDVDLSSNLAQLKRDMELMPVVASTEMSGDSLFDRLLLVLHGLLSSCKPSWLKSKDAKDFSGFDREAVEGLQNELDSMQLPEMIRWRIQAAMPILFPSFHNTVSCQPPSVPIGALSLLQPSICVPGSYTGTINPSQRQVASARNANNMPGKSKSVLSQENDMEIDPWTLLEYGAGSGPSSSSTAAIGGSDNANLRASSWLKGAVRVRRTDPSYIGAVDDDS
Length2246
PositionKinase
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.274
Instability index47.87
Isoelectric point8.56
Molecular weight248658.84
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02896
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     661.62|     311|     611|     481|     861|       1
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  481-  733 (216.18/249.70)	...........................................................................................................................................VEKRADNLakgatAGYPSQSVAKAVQTLDKALLQGDVIDAYKHIFNDLYD......GAVG.EGwvAEVSPSLRS.........................................................................................................................................................................................................................................................slkwlqtvnlslicsvfflcewatcdyrdfrtapPSDVKfTGSKDFSQiYLaiqllklkmkelQKKLKKGRASRKNTSQQNSYSSK..D....LLGD..THEAksngkgLNGRRRNFSDIFDSPGP.....LHDIIVCWiDQHEGHKGEGSKRLQLFMLELIRSGIFYPQAYVRQlLVSGIIDTN..GPMADLNRRKR..HQR
  734-  933 (220.02/138.62)	ILKQLPGQFMLNALEEARIAEG.SELLEAINVYSNERLLVLQELFFDSYNN..TNNSHALAKklncrPTLGRDVDSQVSCDK...RRTVQASKTFRREVGLEELKASISVlLQFPSSSFCSADsGEDESQGSIKrsigsTHSKMDSV.....EGTPGCEDCKRVKRLKLSEDETSCLKVYSPIPSDDDDtwwvrkGPKNlEG..SKVDPLLKS....................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1217- 1363 (125.40/60.58)	.....................................................................................................................................................................................................................tkqasrgrqkpvrktqslaqlaaariedsqgastshvcdnkiscphhrtevenlkpvdgirtthhadiisigrglkqlrfvekrvvtiwllsvvrqlveeseksvpkasqygrpfvaadeksplrwklgedelsailylldvscdsasavkfllwllpkaisnpspaihggrnilmvprnvenyacevgeayllsslrryeniliaadlvpealsatmrhvasfmatngritgsgalvfacyllrrygsiasvieweknfketcdkrllselesgrtegefgfPHGVP.AGTEDPDD.YC............RQRINVGRLSRAGVSMRDMVQRRidDvlhyILGKerKHFA......ANTQRSPATEKGDDDYQvaqqiIMGLMDCF.RQTGGAFQEGDPGLVSSAVSAIVSNVGPTLAKIPD.FTSGSTYSNyqPPMNYLNFAKRllHIH
 1369- 1495 (100.03/40.09)	LLKEALGERKSQAFEIALATEAfSALAVAFAPAKSSRGQLLSPDSLDSHANisNDNSHSSAK.....ATLGRTTKMAAAVSAlviGAIIHGVISLERMVSVLRLKEGLDV.VQFVRSTKTSSN.GNARSVGAFK...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     191.74|      64|     900|      76|     148|       2
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   76-  148 (93.95/93.32)	CPEETLTRENVQhgykdTIDGLEDSKE...IS....LTQVQAFTKPVV.LKCRDAIRKclrAINESRAQKRKAGQvYGVPL
  977- 1048 (97.79/68.96)	CPHHRTEVENLK.....PVDGIRTTHHadiISigrgLKQLRFVEKRVVtIWLLSVVRQ...LVEESEKSVPKASQ.YGRPF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     166.71|      52|    1763|     379|     445|       3
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  379-  445 (81.37/77.69)	FIREPSPGGSDLVDNSRraytisaLVEMLRYLIQAT.....PDTFVALDCFP..LPTCVLShtpsdggfLSKPS
 2088- 2146 (85.34/50.70)	FDREAVEGLQNELDSMQ.......LPEMIRWRIQAAmpilfPSFHNTVSCQPpsVPIGALS........LLQPS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     252.35|      82|      92|     169|     260|       5
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  169-  260 (121.15/100.86)	FRKKwiEGLSLQHKplcslADQVP.LGY.....KKRPLIEVLIRNNVPLLKATWFIKVTYLN.QVRPGSAISSGAPDKTqLSrtELWTKDVIDYLQYLL
  264-  352 (131.20/79.97)	FSRN..NSHSTQHG.....RDRLPqIHYagslqHRSDLAPAVIDGEEPSLHFKWWYVVRLLQwHHAEGLVLPSLIIDWV.LN..QLQEKDLLEILQLLL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02896 with Med12 domain of Kingdom Viridiplantae
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