<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02895

Description Uncharacterized protein
SequenceMQRYHGAGCTSAVNNSAIGGASARDTSRADSSSLPPNFQFNSRRQSQLASYKLKCDKEPLNCRLGPPDFHPQSQTCPEETLTRENVQQGYKDTINGLEDSKEISLTQIQAFTKPVVLKCRDAIRKCLRAINESRAQKRKAGQVYGIPLSGSLLSKPGVFPEQRPCSEDFRKKWIEGLSQQNKSLCSLADQVPLGYKNRTLIEVLIRNNVPLLRATWFIKVTYLNQVRPGSAISTGSLDKAQLSRTELWTKDVIDYLQHLLDEIFSRNNSHFTQHGRDRLPQMHNAASLQHRSAPASATLDGEEPSLQFKWLYVVRLLQWHHAEGLVLPSLIIDWVLNQLQEKELLEILQLLLPIVYGVLETVILCQTYVRNLVAIAIRFIREPSPGGADLVDNSRRAYTVSALVEMLRYLIQAVPDTFVALDCFPLPTCVVSHAFSDGGFLSKSSDDAGKIKSNSADAYVVKVKGFDSQYQSLSFDHVVSTIHKCADNLVKGASAGYPSQSMAKAVQTLDKALLHGDLIEAYKHIFDDLCDGAVGEGWVAEVSPCLRSSLKWLQTVNLSLICSVFFLCEWATCDFRDFRTAPPHNLKFTGRKDFSQIYLAIHLLKLKRKEWQNPEYKKGRASGLYSTAKNTSYQNNYSRRNLLGNIYEAKSNGKYVNGRSSSSSDIFDSPGPLHDIIVCWIDQHEGLKGEGGKRLQLLILELIGSGIFYPQAYVRQLIVSGIIDISRPMADLDRRKRHHRILKQLPGQYMLDILEEARIAKGSELLEAVNVYSNERRLALHNLLFDQHNCANTSHVSTNDKKSHSTSGRDGAFQVSGDQWKTLQSSKTFRRDVDLEGLKASISVLLQFPSLSSTSADSGVEESQGSSKRSVGSTCNKPDMFEGAPGYEDCKRVKRQKLSEDKSLYLQAPSPIPSDDEDTWWMRKGQKNIESFKSDPPHKSTKQVSRGRQKTVRKTQSLAQLAAARIEGSQGASTSHICDNKINCSHHRTEVETLKPVDGIRTTHFGDIVSIEKGLKQLRFVEKRIVMVWLISVVKQLVEESEKSVAKAGQYGRPFIAADEKSPLRWKLGEDELSVILHLMDVSCDSVSAIKFLLWLLPIVSSNPGPTVHSGRNSLRVPRNVDNCACAVGEAYLLSSLRRYENILIAADLVPEALSAIMLRAAAIMATNGRVTGSGTLVFALYLLKKYGKVASVIEWEKKYKGACDKRLFSELESGQQEGDFGFPFGVPGGIEDPDDYFRKKITGGRFSRVGLSMRDMVQRHVDDVLHSILGKERKLVAAGAPKTPAVEKGGDGYQVAQQIIMGLMDCIRQTGGAAQEGDPGLVSSAVSAIVGNVGSTLAKIPDFTGGSNYSNYQPSISSLSFAKRILRIHLICLCLLKEALGERQSRAFEVALGTEASSALAVAFAPAKSSRGQFKLSPDAPESSANISGDNLNSSAKSTLGRTTKMSAAISALLLGAIVHGVISLERMVTVLRLKEGLDVVQFVRSTKTSSNGNARSVGAFKLDNSFEIYVHWFRLFVGNCRSVCDGLVLELLGEQPIVALSRMQRLLPINLVFPPAYAIFAFVIWKPFILSSNIASREDIHQLYQSLTMAIGDAVKHIPFRDVCMRDTRGFYDIIAADTTDSEFAALLELNGLDTHLKSMAFIPLRARLFLNAIIDCKMPYSAFTHDEGNRVSGHGESKALRGENDSKQGKLIRALDALQPAKFHWQWVELRLLLNEQALIDKMENHDMSLVDALRSSSPSSERASPSENEKVFIEIILTRLLVRPDAAPLFSEVVHLFGRSLEDSLLMQAKWFLGGMDVLLGRKTVRQRLINIAETKNLSTKTQFWKPWGWSYSGGDPVTNRGEKKNEATFLEEGEVIEEAVESKKCAKGSQIDVEGSNISQQHVTEKAFIKLILPCIDQSSANSRNTFANDLIKQFSTIEQQVKLVTRGISKQTGTASSIEVSTNKSNSRKSIRGASPGLARRTMAPAESVPPPPAALRASMSLRLQFIVRLLPIICADGEPSSRNMRHMLASVIFRLLGSRVVHEDVDLSFNFKQLKRDAELVSSIASSEIYRDSLFDRLLLVLHGLLSSCQPSWLRSKTANDYSGFDHEALESFQNELDSMQLPEIIRWRIQAAMPILFPSFRNVISCHTPSVPVGALSALQSSIYIPESCNGTLNAPQRQVASARTANNIPGKAKSMPSLQEYDMEIDPWTLLEDGAGSSLSSSGTIVIGGSDRANLRASSWLKGAVRVRRTDLTYTGAVDDGS
Length2251
PositionKinase
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.238
Instability index48.54
Isoelectric point8.90
Molecular weight248971.49
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02895
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.35|      16|      16|     177|     192|       1
---------------------------------------------------------------------------
  177-  192 (27.50/19.60)	LSQQNKSLCS..LADQVP
  193-  210 (22.85/14.81)	LGYKNRTLIEvlIRNNVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.96|      21|     101|    1893|    1913|       2
---------------------------------------------------------------------------
 1893- 1913 (39.25/21.04)	FIKLILP..CID..QSSANSRNTFA
 1992- 2016 (31.71/15.67)	FIVRLLPiiCADgePSSRNMRHMLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     201.31|      67|     101|    1217|    1288|       3
---------------------------------------------------------------------------
 1217- 1288 (111.34/84.36)	QEGDFGF.PFGVPGGIEDPDDYFRK..KITGG.RFSRVGLSMRDM.VQRHVDDVlHSI...LGKErklvAAGAPKTPAVE
 1316- 1390 (89.97/56.17)	QEGDPGLvSSAVSAIVGNVGSTLAKipDFTGGsNYSNYQPSISSLsFAKRILRI.HLIclcLLKE....ALGERQSRAFE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.84|      15|     101|     860|     877|       4
---------------------------------------------------------------------------
  860-  877 (22.44/21.28)	VEESQGSSKRSVgstC.NK
  966-  981 (24.40/13.47)	IEGSQGASTSHI...CdNK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     175.31|      55|    1147|     787|     847|       5
---------------------------------------------------------------------------
  787-  847 (81.52/65.59)	QHNCANTSHVSTNdkKSHSTSGRDGAfqVSGDQWKTLQSSKTFRRDVdlEGLKASISVLLQ
 1937- 1991 (93.79/56.37)	QTGTASSIEVSTN..KSNSRKSIRGA..SPGLARRTMAPAESVPPPP..AALRASMSLRLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     244.00|      80|    1147|     386|     473|       6
---------------------------------------------------------------------------
  386-  473 (119.19/104.91)	GGADLVDNSR..RAYTVSaLVEMLRYLIQAvpdtFVALDCFPLPTCVVS....HAFSDGgfLSKSSDDAGKiKSNSADAYVVKVKGF.........DSQYQSL
 1535- 1629 (124.80/83.43)	GEQPIVALSRmqRLLPIN.LVFPPAYAIFA....FVIWKPFILSSNIASrediHQLYQS..LTMAIGDAVK.HIPFRDVCMRDTRGFydiiaadttDSEFAAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.71|      14|      15|     255|     268|       9
---------------------------------------------------------------------------
  255-  268 (24.50/19.32)	YLQHLLDEIFSRNN
  271-  284 (27.21/22.56)	FTQHGRDRLPQMHN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.80|      10|      16|     584|     594|      10
---------------------------------------------------------------------------
  584-  594 (14.76/11.61)	HNLKFTgRKDF
  602-  611 (19.04/ 9.58)	HLLKLK.RKEW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.99|      34|     344|     327|     383|      19
---------------------------------------------------------------------------
  348-  383 (54.32/84.81)	LQLLLPIVYGvlETVILCQTYVRNLVAIAIRFIREP
  695-  728 (58.68/34.24)	LQLLILELIG..SGIFYPQAYVRQLIVSGIIDISRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.23|      24|    1948|     224|     249|      20
---------------------------------------------------------------------------
  224-  249 (33.69/32.64)	NQVrPGSAISTGSLDKAQLsRTELWT
 2175- 2198 (46.54/33.13)	NNI.PGKAKSMPSLQEYDM.EIDPWT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02895 with Med12 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RKGQKNIESFKSDPPHKSTKQVSRGRQKTVRKTQSLAQ
2) SADSGVEESQGSSKRSVGSTCNKPDMFEGAPGYEDCKRV
923
855
960
893










Molecular Recognition Features






MoRF SequenceStartStop




NANANA