<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02894

Description Uncharacterized protein
SequenceMDTNNWRSTPPSGEPTMDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLTMENKSQNTVPNTGNNSKPPDPGSQGMQNQVHSQGQSIPISLQCNQSQAQLLPQSVPNNMASAGVQSSAGLQSGMPAVSGLTQNPVPNVVGQNTNMQNMSGISQNSLGQGMSSNMFANQQRQMPRQQVLPQQQQQQQQQQLYHQQLQNQLIKQKLQQGNLQPSLMQSHMQQQQNLLPPTQLQSSQQSGMQTSSVIQQSSMQSTPLPGLQHNQQSSLQQSSQSMLQQHQQFRQQQQAQQAASSGIHQQQTPMTQQSMMPQQQHQHQQPHIMGQQTNAANSQQNQLIGQQNSIADMQQQRLLGQANNLPNLQQQQQQQQQLMAQKNNMSNIHQQQLGPQSNSSGLQQQQQPHLIGAQSGNSSMQANQQSLHMLPQPKVQLQTQQSSPNLLPPTQVQTSQQPQQQQQQQLMSQMQTQSTLQQQLGLPQQHNMPQRLQASGQVSSSLLQSQNLTEQQKQLYQSQRAVPETSSTSLDSTAQTGLANGGDWLEEVYQKILTLKETYLPELNEMYQKIATKLQQHDSNPAQPKSEQLEKLKIFKTMLERIISFLTVSRANITPPFKEKLSSYEKQIINFINSNRPRKPVSVQQQGQLPPPHMHSMQQQQQSQISQTQSHDNQMNPQLQSMNLQGSVPTMQPNNMTSMQHNSLSPGVSTAQQTMLNSLQPGSSLDSGQGNALGPVQQVAPGPLQQNPVSTSQQTNFNSNSLSSQSGLSVLPQNINPLQSNSNMLQHQHMKQQQEQQMLQSQKYKQQFQRQMQHQHIQQKQQLLQQQQQQQQQRQQQQQQQAKQQLSTHQMSQLHQMNDVNDMRQGMGVKPGVFQHLPAGQRQSYTHQQLKPGAQFPVSSPQLLQAASPQIPQYSSPQVDQQNLPSISKTGTPLQSANSPFVVPSPSTPLAPSPMPGESEKPVLGTSLPNVANLGHQQGTGVQTGSQSLAIGTPGISASPLLAEFSGADGTHANALTAVSSKSNVTEQPLERLIKAVKSISPTALGASVSDIGSVVSMTDRIAGSAPGNGSRAAVGEDLVAMTKCRLQAKNFISQDGMSGTKKIRRYTSAMPLNVVSSAGSLNDSFKQLTGSETSELESTATSSVKRPRIEANHALLEEIREINQRLIDTVVDISDEDVDPGAAAATAEGGEGTIVKCSFSAVALSANLKSQYMSAQMSPIQPLHLLVPTNYPNCSPILLDKFPVEVSKENEDLSVKAKSRFSISLRTLSQPMSLGEIARTWDVCARAVISDHAKLSGGGSFSSKYGTWENCLSAA
Length1344
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.03
Grand average of hydropathy-0.787
Instability index72.85
Isoelectric point9.31
Molecular weight147717.37
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02894
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     704.81|      74|      87|     187|     260|       1
---------------------------------------------------------------------------
   71-  137 (71.39/11.47)	AATSQSD....YL.K........RISLKM............................LTMENK.........S.....QN....TVPNTG...........NNSKPPDPGSQGM......Q..NQV..........HSQGQSI...PISLQCN....Q.SQAQ
  187-  260 (136.56/29.57)	SGISQNS....LG.Q........GMSSNM............................FANQQR.........Q.MPR.QQ....VLPQQQ...........QQQQQQQLYHQQL......Q..NQL...IKQK...LQQGNLQ...PSLMQSH....M.QQQQ
  261-  315 (73.16/11.96)	NLLPPTQ....LQ.............................................SSQQS.........G.MQT.SS....VI..QQ...........SSMQSTPLPGLQ.......H..N.............QQSSLQ...QS.SQSM....L.QQHQ
  317-  376 (59.29/ 8.11)	..FRQQQ....QA.Q........QAASSG............................IHQQQT.........P.MTQ.QS....MMPQQQ...........HQHQQPHIMGQQTnaansqQ..NQL...IGQQ.......N......................
  379-  425 (53.96/ 6.63)	..........................ADM..............................QQQR.........L.LGQ.AN....NLPNLQ...........QQQQQQQ................QL...MAQK...NNMSNIH.......QQQ....L.GPQS
  428-  514 (81.51/14.28)	SGLQQQQqphlIGaQ........SGNSSM............................QANQQSlhmlpqpkvQ.LQT.QQsspnLLPPTQ...........VQTSQQP..QQQQ......Q..QQL...MSQM...QTQSTLQ...QQL...G....L.PQQH
  523-  604 (52.29/ 6.16)	SGQVSSS....LL.Q..........SQNL.............................TEQQK.........Q.LYQsQR....AVPETS.......stslDSTAQTGLANGGD......W..LEE...VYQKiltLKETYL....PELNEMYqkiaT.KLQQ
  607-  729 (52.06/ 6.10)	SNPAQPK....SE.QleklkifkTMLERIisfltvsranitppfkeklssyekqiinFINSNR............PR.KP....VSVQQQgqlppphmhsmQQQQQSQISQTQS......H..DNQ...MNPQ...LQSMNLQgsvPTMQPNN....MtSMQH
  797-  849 (71.54/11.51)	SVLPQNI....NP.L........QSNSNM............................LQHQHM.........K.............QQQE...........QQMLQSQKYKQQF......Q..RQM...QHQ....................H....I.QQKQ
  882-  950 (53.05/ 6.37)	..LHQ...................MND...............................VNDMR.........QgMGV.KP....GVFQHL...........PAGQRQSYTHQQL......KpgAQFpvsSPQL...LQAASPQ...IPQYSSP....Q.VDQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.11|      17|      26|    1297|    1313|       2
---------------------------------------------------------------------------
 1297- 1313 (32.62/22.66)	LSQPMSLGEIARTWDVC
 1324- 1340 (33.49/23.48)	LSGGGSFSSKYGTWENC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.14|      12|      15|       1|      12|       3
---------------------------------------------------------------------------
    1-   12 (26.56/14.68)	MDTNNWRS..TPPS
   17-   30 (21.58/10.57)	MDTGDWRTqlQPDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.00|      24|      28|     730|     757|       4
---------------------------------------------------------------------------
  730-  757 (32.94/25.01)	NSLSPgVSTAQQTML..NSLQPGSSLdsgQ
  759-  773 (29.24/10.96)	NALGP....VQQVAP..GPL.........Q
  775-  796 (25.81/ 7.73)	N...P.VSTSQQTNFnsNSLSSQSGL....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      67.37|      15|      15|     960|     974|       5
---------------------------------------------------------------------------
  960-  974 (25.37/11.92)	TPLQSANSPFVVPSP
  976-  990 (23.87/10.73)	TPLAPSPMPGESEKP
 1056- 1070 (18.13/ 6.20)	QPLERLIKAVKSISP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.79|      25|     120|    1025|    1049|       7
---------------------------------------------------------------------------
 1025- 1049 (42.04/29.19)	SASPLLAEFSGADGTHANAL..TAVSS
 1146- 1172 (36.75/24.47)	SAGSLNDSFKQLTGSETSELesTATSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.01|      16|      22|    1072|    1087|       8
---------------------------------------------------------------------------
 1072- 1087 (27.19/17.41)	ALG.ASVSDIG.SVVSMT
 1094- 1111 (19.82/10.70)	APGnGSRAAVGeDLVAMT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02894 with Med15 domain of Kingdom Viridiplantae
Unable to open file!