<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02892

Description Uncharacterized protein
SequenceMNQQPGLGDNKESEEEPVAQPVDSAVKLGLEKPVGSEPVSGVAEDEVLVASSGKSEDTVMEEDPVNPATVFCIWLKQPKSNLRYKMRVPELCRNFSAVAWCGKLNAIACATETCARIPSSNANPPFWIPIQIVIPERPTECAVFNVTADSPRDSVQFIEWSPTSCPRALLIANFHGRVTIWTQPSQGPAHLVRDASFWKREHEWRQDIAVVTKWLSGVSPYRWLSSKSSNPANSKSTFEEKFLSQQSQNSARWPNFLCVCSVFSSGSVQLHWSQWPPTQGSVARKWFCTSKGILGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGTGNGFQATAKTSTSNGIPPSVNPPNWAGFAPLAAYLFSWQEYLISEAKQGKKTADQDFNDVVSLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPTITGWRVQRWESSLQPVVLHNIFGNPSSSFGGQAPKQTVWLSKVDTSIPPTNDFKSHQAAAAGPTSDSRKASDSSSEKLKRVSFDPFDLPSDVRTLARIVYSAHGGEIAISFLRGGVHIFSGPNFSAVDNYQINVGSAIAAPAFSSTSCCSASVWHDTSKDRTMLKIIRVLPPAVSSSQIKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVSEPWQASGETLSSIDPEAMAVDPALVQSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVTSPTQSSATPATSQAGQSSTTSSTGSTQMQAWVQGAIAKISGSTDGVSTSTPNTISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRALQPRFAQRNTDANPQKNQPGAPGKMEEVNSVAAKPTTMTRPDEAQGARAGQLVPGAKGAEEGPRGLKIGSGNAGQGYTFEEVKVLFLILMDLCRRTSGLPHPLPVSQVGSSSIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPSSEEWHRRNMFGGPWSDLEDMSPGDDIPRLSNSIDMPDTSSMESSNVHYGVQTLWPRKRRLSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCMRCLRQTSAFASADSTHQPSQNERVSWWISRWAYGCPMCGGPWVRVV
Length1248
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.08
Grand average of hydropathy-0.213
Instability index44.43
Isoelectric point6.49
Molecular weight134955.65
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02892
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.50|      17|      19|     843|     859|       1
---------------------------------------------------------------------------
  843-  859 (29.30/17.63)	ATSQAGQSSTTSST.G.ST
  863-  881 (20.20/ 9.34)	AWVQGAIAKISGSTdGvST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.47|      14|      19|     238|     254|       2
---------------------------------------------------------------------------
  222-  235 (22.86/ 6.97)	RWLSSKSSNPANSK
  241-  254 (26.61/20.28)	KFLSQQSQNSARWP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     539.36|     173|     568|     474|     673|       3
---------------------------------------------------------------------------
  474-  673 (268.08/193.49)	SSLQpVVLHNIFGN....PSSsfggqapkqtvwlskVDTSIPP..TNDFKSHQAAAAGPTSDSRKASDSSSEKLKRVSF.DPF.DL....P.SDVRTLARIVYSAHGGEIAISFLRGGVHIFsGPN...FSAVD.NYQIN..VGSAIAAPAFSSTSCCSASVWHdTSKDRTMLKIIRVLPpavSSSQIKANSSTWERAIAERF.WWsllvgVDWWdAVGC
 1045- 1237 (271.27/146.49)	SSIQ.VRLHYIDGNytvlPEV...............VEASLGPhmQNMPRPRGADAAGLLLRELELHPSSEEWHRRNMFgGPWsDLedmsPgDDIPRLSNSIDMPDTSSMESSNVHYGVQTL.WPRkrrLSERDaAFGLNtsVGLGAYLGIMGSRRDVVTAVWK.TGLEGVWYKCMRCLR...QTSAFASADSTHQPSQNERVsWW.....ISRW.AYGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.15|      17|      19|       7|      23|       4
---------------------------------------------------------------------------
    7-   23 (28.89/15.76)	LGDNKESEEEPVAQPVD
   28-   44 (26.22/13.62)	LGLEKPVGSEPVSGVAE
   54-   67 (18.04/ 7.08)	KSEDTVMEEDPV.NP..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.78|      17|      19|     788|     804|       5
---------------------------------------------------------------------------
  788-  804 (28.66/17.48)	IQAYVDAVLDLASHFIT
  806-  822 (30.12/18.70)	LRRYASFCRTLASHAVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.00|      18|      21|     160|     177|       6
---------------------------------------------------------------------------
  138-  152 (20.98/ 8.96)	...PTECAVFNVT..AD.SPR
  160-  177 (36.18/21.45)	WS.PTSCPRALLI..ANFHGR
  181-  200 (24.84/12.14)	WTqPSQGP.AHLVrdASFWKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.02|      18|      18|     280|     297|       7
---------------------------------------------------------------------------
  280-  297 (33.08/19.09)	GSVARKWFCTSKGILG.AG
  300-  318 (24.76/12.38)	GIMAADAIITDSGAMHvAG
  324-  337 (24.18/11.92)	PSTVVVWEVTP....G.TG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.87|      19|     232|     108|     127|       8
---------------------------------------------------------------------------
  108-  127 (35.47/19.89)	ACA.TETCARIPSSnANPPFW
  342-  361 (33.40/14.34)	ATAkTSTSNGIPPS.VNPPNW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.29|      10|      19|     753|     762|      10
---------------------------------------------------------------------------
  753-  762 (17.09/ 9.58)	VNPSALVSEP
  773-  782 (18.20/10.75)	IDPEAMAVDP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02892 with Med16 domain of Kingdom Viridiplantae
Unable to open file!