<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02888

Description Uncharacterized protein
SequenceMEGMIQDPSQPASQPQQQNQAVVGAERLNQALQQQLNLESVKTRAISLFKAITRILEDFDAYSRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNADNAPILPVMLSSKLLPEMEVEDNLKREQLLLGMQNLPIPSQIDKLKARIDMIAAACESAEKVLADTRKAYCFFSRQGPAILPTLDKGQAAKIQEQENLLRTAVNFGEGLRLPADQKLITPSLPLHLVDIMPAADGVQSFADPSGMYMKNTPLMSNNIGSQGSLLQATGAQLIGRSAASPSAATSATSYDNTTTSPLPYANSPRSATTMMNTPSPQQQTQQLQQQQQHQQQQQQQQQRQKMMQLPQHQQQLLAQQQFRQSTMHGLGQNQLPLHDLQGQTQQKFQSLHGQMQFSQPLGHQQFQGRQLPPGHVQHGIGQSQLNQGNQLSRHLGQFSSAANTALFNAAQGTPSTQMVSYITLQSVLCSVFLHLFFQNIIYDVLFSP
Length490
PositionHead
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.459
Instability index59.08
Isoelectric point8.33
Molecular weight54322.03
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02888
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     138.47|      23|      23|     362|     384|       1
---------------------------------------------------------------------------
  323-  342 (28.80/ 8.12)	...QQQTQQLQQQQQHQQQQQQQ
  343-  358 (31.74/ 9.67)	QQ.RQKMMQ......LPQHQQQL
  362-  384 (46.30/17.36)	QQFRQSTMHGLGQNQLPLHDLQG
  388-  404 (31.63/ 9.62)	QKF.QS.LHGQMQFSQPL....G
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.25|      14|      18|     286|     303|       2
---------------------------------------------------------------------------
  286-  303 (18.12/19.52)	SPSaatSATSYDNtTTSP
  309-  322 (29.14/15.81)	SPR...SATTMMN.TPSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     180.74|      58|     389|      33|      92|       4
---------------------------------------------------------------------------
   33-   92 (94.76/58.24)	QQQLNLESVKTRAISLFK.AITRILedFDAYSRTNTTPKWQDILGQYSM..VNLELF..NIVDEI
  424-  486 (85.98/47.47)	QSQLNQGNQLSRHLGQFSsAANTAL..FNAAQGTPSTQMVSYITLQSVLcsVFLHLFfqNIIYDV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02888 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GAQLIGRSAASPSAATSATSYDNTTTSPLPYANSPRSATTMMNTPSPQQQTQQLQQQQQHQQQQQQQQQRQKMMQLPQHQQQLLAQQQFRQSTMHGLGQNQLPLHDLQGQTQQKFQ
276
391










Molecular Recognition Features






MoRF SequenceStartStop




NANANA