<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02882

Description Uncharacterized protein
SequenceMANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQVPSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQFAPSSFGLPQNNVSAPSQFHPISQVHAPVAPVAGQPWLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKEREYAAEEKRRNIAEYRKFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLLIFQDYIHDLEKEEEEKKKMQKEQLRRAERKNRDAFRKLMEEHVADGTLTAKTYWRDYCLKVKELPQYLAVASNTSGSTPKDLFEDVAEELDKQYHEHKTRIKEAMKTGKVTMVYSWTFEDFKAAISEDVGSSSISDINLKLVYDELLERAKEKEEKEAKKRQRLADDFTRLLHTYKEITASSDWEESKPLFEESQEYRSIAEESFRREIFEEYITHLQEKAKEKERKREEEKAKKEKDREEKDKRKEKEKERKEKEREREREKGKDRSKKDETDSENLDISDSHGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ
Length984
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-1.173
Instability index58.29
Isoelectric point6.72
Molecular weight112171.98
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02882
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.29|      39|      44|     178|     220|       1
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  139-  202 (48.98/30.29)	WlstgNQNVSLATPTQHtsqqpppssADTNAnvpsltpqssdwQEHTSADGRRYYYNKRTRQSS
  203-  243 (67.30/34.20)	W....EKPLELMTPIER.........ADAST..........vwKEFTTPEGRKYYHNKVTKESK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     293.26|      44|      44|     851|     894|       2
---------------------------------------------------------------------------
  503-  549 (31.49/11.13)	.EESKEltssmRWSKAQslfeN....D.............ERFKAVERARD.REDL............................................F..ENYI........V..........DLER
  550-  619 (23.98/ 6.72)	KEREYA.....AEEKRR....NiaeyRkflescdfikansQWRKVQDRLED.DERC............................................SrlEKIDrllifqdyIHD.....LEKEEE.
  620-  704 (24.26/ 6.89)	.EKKKM.....QKEQLR....R....A.............ER.KNRDAFRKlMEEHvadgtltaktywrdyclkvkelpqylavasntsgstpkdlfedvA..EELD.........KQ.....YHEHK.T
  787-  822 (38.18/15.05)	SDWEES.....KPLFEE....S....Q.............EYRSIAEESFR.REIF............................................E..EYI.................T..H..L
  823-  850 (29.66/10.05)	Q..EKA......KEKER....K....R.............EEEKAKKEKDR.EEKD............................................K..R..........................
  852-  894 (64.82/30.65)	.EKEKE.....RKEKER....E....R.............EREKGKDRSKK.DETD............................................S..ENLD........ISD.....SHGHKEE
  897-  945 (51.67/22.94)	KEKEKD.....RKHRKR....H....A.............ADDGSSDKDDR.EESK............................................K..SRRH........GSDrkksrKHAHSPD
  947-  977 (29.20/ 9.78)	DSESRH.....RKHK.R....D....H..............RDGSRRNSGY.EELE............................................D..GEL........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     146.62|      16|      19|      24|      39|       3
---------------------------------------------------------------------------
   24-   39 (28.86/12.74)	QSYGSPLSSQFRPV..VP
   44-   61 (21.58/ 7.76)	QHFVPAASQQFRPVgqVP
   76-   88 (24.53/ 9.78)	Q.FSQPMQ.QFPP...RP
  106-  118 (21.34/ 7.59)	SSFGLP...QNNVS..AP
  119-  133 (25.62/10.52)	SQF.HPISQVHAPV..AP
  261-  276 (24.70/ 9.89)	SSQGTPSGSGVAPQ..AP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.97|      31|      34|     279|     309|       4
---------------------------------------------------------------------------
  279-  309 (53.86/27.17)	TAVS.AAETPTT.............AIPVS.SNTLQDSS...P.VSVTPV
  315-  346 (33.59/14.45)	TSVS.G...PTT.............G.PVAqSAAMSATGvqlPvVSVTPV
  365-  409 (33.51/14.40)	TAVTrSSETTATqdtmhfadgasaqDIEEA.KKGMATAG...K.VNMTPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     219.76|      71|     274|     428|     502|       5
---------------------------------------------------------------------------
  428-  502 (103.38/69.45)	KNAFKSlLESANVQSdWTWEQTMREIINDKRYGALKTLgERKQAFNEYLGQRKKLEAEERRMRQKKArEEFTKML
  707-  777 (116.37/62.19)	KEAMKT.GKVTMVYS.WTFEDFKAAISEDVGSSSISDI.NLKLVYDELLERAKEKEEKEAKKRQRLA.DDFTRLL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02882 with Med35 domain of Kingdom Viridiplantae
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