<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02882

Description Uncharacterized protein
SequenceMANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQVPSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQFAPSSFGLPQNNVSAPSQFHPISQVHAPVAPVAGQPWLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKEREYAAEEKRRNIAEYRKFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLLIFQDYIHDLEKEEEEKKKMQKEQLRRAERKNRDAFRKLMEEHVADGTLTAKTYWRDYCLKVKELPQYLAVASNTSGSTPKDLFEDVAEELDKQYHEHKTRIKEAMKTGKVTMVYSWTFEDFKAAISEDVGSSSISDINLKLVYDELLERAKEKEEKEAKKRQRLADDFTRLLHTYKEITASSDWEESKPLFEESQEYRSIAEESFRREIFEEYITHLQEKAKEKERKREEEKAKKEKDREEKDKRKEKEKERKEKEREREREKGKDRSKKDETDSENLDISDSHGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ
Length984
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-1.173
Instability index58.29
Isoelectric point6.72
Molecular weight112171.98
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02882
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.29|      39|      44|     178|     220|       1
---------------------------------------------------------------------------
  139-  202 (48.98/30.29)	WlstgNQNVSLATPTQHtsqqpppssADTNAnvpsltpqssdwQEHTSADGRRYYYNKRTRQSS
  203-  243 (67.30/34.20)	W....EKPLELMTPIER.........ADAST..........vwKEFTTPEGRKYYHNKVTKESK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     293.26|      44|      44|     851|     894|       2
---------------------------------------------------------------------------
  503-  549 (31.49/11.13)	.EESKEltssmRWSKAQslfeN....D.............ERFKAVERARD.REDL............................................F..ENYI........V..........DLER
  550-  619 (23.98/ 6.72)	KEREYA.....AEEKRR....NiaeyRkflescdfikansQWRKVQDRLED.DERC............................................SrlEKIDrllifqdyIHD.....LEKEEE.
  620-  704 (24.26/ 6.89)	.EKKKM.....QKEQLR....R....A.............ER.KNRDAFRKlMEEHvadgtltaktywrdyclkvkelpqylavasntsgstpkdlfedvA..EELD.........KQ.....YHEHK.T
  787-  822 (38.18/15.05)	SDWEES.....KPLFEE....S....Q.............EYRSIAEESFR.REIF............................................E..EYI.................T..H..L
  823-  850 (29.66/10.05)	Q..EKA......KEKER....K....R.............EEEKAKKEKDR.EEKD............................................K..R..........................
  852-  894 (64.82/30.65)	.EKEKE.....RKEKER....E....R.............EREKGKDRSKK.DETD............................................S..ENLD........ISD.....SHGHKEE
  897-  945 (51.67/22.94)	KEKEKD.....RKHRKR....H....A.............ADDGSSDKDDR.EESK............................................K..SRRH........GSDrkksrKHAHSPD
  947-  977 (29.20/ 9.78)	DSESRH.....RKHK.R....D....H..............RDGSRRNSGY.EELE............................................D..GEL........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     146.62|      16|      19|      24|      39|       3
---------------------------------------------------------------------------
   24-   39 (28.86/12.74)	QSYGSPLSSQFRPV..VP
   44-   61 (21.58/ 7.76)	QHFVPAASQQFRPVgqVP
   76-   88 (24.53/ 9.78)	Q.FSQPMQ.QFPP...RP
  106-  118 (21.34/ 7.59)	SSFGLP...QNNVS..AP
  119-  133 (25.62/10.52)	SQF.HPISQVHAPV..AP
  261-  276 (24.70/ 9.89)	SSQGTPSGSGVAPQ..AP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.97|      31|      34|     279|     309|       4
---------------------------------------------------------------------------
  279-  309 (53.86/27.17)	TAVS.AAETPTT.............AIPVS.SNTLQDSS...P.VSVTPV
  315-  346 (33.59/14.45)	TSVS.G...PTT.............G.PVAqSAAMSATGvqlPvVSVTPV
  365-  409 (33.51/14.40)	TAVTrSSETTATqdtmhfadgasaqDIEEA.KKGMATAG...K.VNMTPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     219.76|      71|     274|     428|     502|       5
---------------------------------------------------------------------------
  428-  502 (103.38/69.45)	KNAFKSlLESANVQSdWTWEQTMREIINDKRYGALKTLgERKQAFNEYLGQRKKLEAEERRMRQKKArEEFTKML
  707-  777 (116.37/62.19)	KEAMKT.GKVTMVYS.WTFEDFKAAISEDVGSSSISDI.NLKLVYDELLERAKEKEEKEAKKRQRLA.DDFTRLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02882 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LQEKAKEKERKREEEKAKKEKDREEKDKRKEKEKERKEKEREREREKGKDRSKKDETDSENLDISDSHGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ
2) MANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQVPSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQFAPSSFGLPQNNVSAPSQFHPISQVHAPVAPVAGQPWLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRT
3) VQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVY
4) WEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTK
5) WTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSAT
822
1
336
203
244
984
198
421
240
334










Molecular Recognition Features






MoRF SequenceStartStop




1) GYEELEDG
2) KDDREESKKSRRH
3) KEEKKKEKEKDRKHRKRHAADD
4) RHRKHKRDHR
5) RKKSRKH
968
918
892
951
934
975
930
913
960
940