<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02881

Description Uncharacterized protein
SequenceMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKEREYAAEEKRRNIAEYRKFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLLIFQDYIHDLEKEEEEKKKMQKEQLRRAERKNRDAFRKLMEEHVADGTLTAKTYWRDYCLKVKELPQYLAVASNTSGSTPKDLFEDVAEELDKQYHEHKTRIKEAMKTGKVTMVYSWTFEDFKAAISEDVGSSSISDINLKLVYDELLERAKEKEEKEAKKRQRLADDFTRLLHTYKEITASSDWEESKPLFEESQEYRSIAEESFRREIFEEYITHLQEKAKEKERKREEEKAKKEKDREEKDKRKEKEKERKEKEREREREKGKDRSKKDETDSENLDISDSHGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ
Length654
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-1.417
Instability index52.06
Isoelectric point6.38
Molecular weight77084.70
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02881
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     136.24|      37|      38|     523|     560|       2
---------------------------------------------------------------------------
  525-  563 (52.31/24.81)	KERKEKEREREREKGKDRSKKDETDSENLDiSDSHGhKE
  564-  587 (34.58/11.42)	EKKKEKEKDRKHRK...RHAADDGSS............D
  588-  623 (49.35/19.65)	KDDRE.ESKKSRRHGSDR.KKSRKHAHSPD.SDSESrHR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.25|      16|      16|     178|     193|       3
---------------------------------------------------------------------------
  181-  199 (21.16/11.07)	SMRWSKAQSLFEN.derFKA
  200-  219 (16.09/ 6.21)	VERARDREDLFENyivdLER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.25|      26|      61|      11|      36|       4
---------------------------------------------------------------------------
   11-   36 (44.23/36.06)	VSVTPV.PAVPSRGSTVSAPSVGATTA
   74-  100 (41.02/32.89)	VNMTPVeEKVPDDEPLVYANKLEAKNA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.84|      21|      25|     118|     142|       5
---------------------------------------------------------------------------
  118-  140 (30.88/30.10)	QTMREiiNDKRYGALKTLGERKQ
  157-  177 (34.95/18.70)	RRMRQ..KKAREEFTKMLEESKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.64|      22|      25|     450|     471|       6
---------------------------------------------------------------------------
  323-  341 (20.11/ 7.08)	...LTAKTYWRDYCLKVKELPQ
  342-  363 (27.70/12.28)	YLAVASNTSGSTPKDLFEDVAE
  450-  471 (35.83/17.86)	YKEITASSDWEESKPLFEESQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     227.85|      63|     139|     252|     314|       7
---------------------------------------------------------------------------
  221-  296 (94.71/53.32)	EREYAAEE..KRRNiaEYRKFL.............escdfikansqW..RKVQDRLEDDERCSRLEKIDRLLIFQDYIH.................................................DL.EK...................EEEEKKKMQK
  297-  377 (29.28/11.17)	EQLRRAER..KNRD..AFRKLM.........................................................eehvadgtltaktywrdyclkvkelpqylavasntsgstpkdlfedvaeEL.DK...................QYHEHKTRIK
  378-  438 (71.23/38.20)	E....AMKtgKVTM..VYS...........................WtfEDFKAAISEDVGSSSISDINLKLVYDELLE.................................................RAkEK...................EEKEAKKRQR
  439-  523 (32.62/13.32)	..L..A.......D..DFTRLLhtykeitassdweeskplfeesqeY..RSIA......EESFRRE......IFEEYIT.................................................HLqEKakekerkreeekakkekdrEEKDKRK.EK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02881 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LQEKAKEKERKREEEKAKKEKDREEKDKRKEKEKERKEKEREREREKGKDRSKKDETDSENLDISDSHGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ
2) PVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLV
492
9
654
90










Molecular Recognition Features






MoRF SequenceStartStop




1) EKKKEKEKDRKHRKRHAADD
2) KDDREESKKSRRH
3) RHRKHKRDHR
4) RKKSRKHA
5) SGYEELEDG
564
588
621
604
637
583
600
630
611
645