<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02873

Description ATP-dependent DNA helicase
SequenceMEADEIAEELQNIEFEIHDVEEQIRELIEKQEKLYERRSELQVLLETCPIDVKDGSAPTNVQAEDWSRSFDWDSQAEDIRFNVFGISSYRPNQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAILRQGIALVVSPLLSLIQDQVMGLVASGIPARMLTSTTSKEDEKFIYKALEKGEEGLKLLYVTPEKVSKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPVVALTATATMKVQNDLIEMLHIPKCVKFVSTVNRPNLFYMVREKSSVGKIVVDEIAKYIKESYPNKESGIVYCFSRKECEQVASELCERGISADYYHADMDVNAREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLFFRSADMPRQSTMVFHENSGLQNLYDMVQYCQSKRQCRRSAFFRHFAEPLQECNGMCDNCAFSSEIKEVDASGHSKLLISLVREMQEKDQRVTMLQLVDRVKNKQKQLDFELKREEMEQLVVQLILDRVLKEEFQHTAYATNSYVTVGPRANQVMLGKKIIKMDVTSTSKDVDGYRKSSKHGVTLGLEFKLDKLRKELASHDKGIFPHSVLSGQQISSISAHLPNSIEELEKIIGKLKTEKYGGRILEEVKKYGNAEHPNNEVLNEEESSEIRPPRKKLKKANKQVIMVDSSNDESD
Length711
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.454
Instability index45.76
Isoelectric point6.59
Molecular weight80976.88
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02873
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.48|      37|     191|     365|     408|       6
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  145-  181 (62.14/40.12)	VMGLVASGI....P.AR.MLTSTTSKEDEKFIYKALEKGEEGL
  366-  408 (51.34/52.79)	IVGTVAFGMginkPdVRfVIHHSLSKSMETYYQESGRAGRDGL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02873 with Med34 domain of Kingdom Viridiplantae
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