<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02871

Description Uncharacterized protein
SequenceMAGSWRARGSLVVLAIVLFGCLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNAERTIFDVKRLIGRKFDDKEVQKDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMVLTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDHRIMDYFIKLIKKKHGKDISKDNKALGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKRQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSMTKDCRLLGKFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKLKEKIDARNSLETYVYNMKNQISDKDKLADKLESDEKEKVETAVKEALEWLDDNQNAEKEDFEEKLKEVEAVCNPIITAVYQRSGGGPGGAASNEEEDDSHDEL
Length667
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.438
Instability index27.76
Isoelectric point5.17
Molecular weight73517.57
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02871
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     117.03|      27|      27|     563|     589|       1
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  531-  562 (22.24/11.59)	...EKI..TI.TNdkgrlsqeEIERMVREAEEFAEEDK
  563-  589 (43.14/29.41)	KLKEKI..DA.RN........SLETYVYNMKNQISDKD
  590-  618 (35.16/22.61)	KLADKLesDE.KE........KVETAVKEALEWLDDNQ
  628-  645 (16.50/ 6.70)	KLKE.V..EAvCN........PIITAVYQ.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     376.61|      77|     104|     343|     419|       2
---------------------------------------------------------------------------
   71-  143 (71.37/41.26)	.....PSW.VAF........TDS...ERLIG.EAaknqAAVNAERTIFDVKRLIGR..K.FDDKEvqkdmklvPYKIVN.KD.GKPY....IQVK...IKDG....E
  144-  235 (76.93/45.06)	TKVFSPEEiSAMvltkmketAEAFLGKKIKD.AV....VTVPAYFNDAQ.RQATKDagI.IAGLN........VARIINePTaAAIAYGLDKKGGeknILVFDLGGG
  343-  419 (127.52/79.61)	RKTMGPVK.KAM........EDAGLEKRQID.EI....VLVGGSTRIPKVQQLLKD..Y.FDGKE........PNKGVN.PD.EAVAYGAAVQGG...ILSGEGGDE
  448-  525 (100.78/61.35)	RNTVIPTK.KSQ........VFTTYQDQQTTvSI....QVFEGERSMTKDCRLLGK..FdLTGIP........PAPRGT.PQ.IEVTFEVDAN.G...ILNVKAEDK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02871 with Med37 domain of Kingdom Viridiplantae
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