<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02870

Description Uncharacterized protein
SequenceMDPSQNFPPPMSGQFRPVVPSQQPQQFVSVPPQQFQPVGRGVTVMNAGFPSQTPQPQIPQVMQQLPARPGQPGHILPPPPSVSLPAAQPNLHVNPGASVPQPNIQAPNNYFPGVPASHLSSSYTFAPSSYGQVTVSHNAMAQYQPMAQLQAPNVPVGGQVGIHVSQSTSVTSAQQIGEQPSASTATIPPKPTEEALTDWIEHTSANGRRYYYNKKTRQSSWEKPLELMTPIERADASTNWKEYTSPDGRKYYYNKVTNLSTWSLPEELKLAREQVEMASAKGPLSDVSSHIPAPVPPASKAQSGADTPSTIIQGASSSPVPVAPVPSSSKIESVVVSGSDLPVATSSTVTNVDVVQIVEDTITPSVAVSESSEVSLSVADAATTLMNNISKVSSLDMVSSEGVSTQNADETVKDVVVSEKINNALEEKAIDQESLTYASKQEAKDAFKALLESANVGSDWTWDQAMRVIINDKRYGALRTLGERKQAFNEFLGQKKKQDAEERRIKQKKAREEYKKMLEECLELTSSTRWSKAVTMFENDERYKAVEREKDRKDFFENYIDELRQKERVKAQEQRKQNVMEYRRFLESCDFIKANSQWRKVQDRLETDERCSRLDKIDRLEIFQEYIRDLEKEEEEQRRIQKEELRKTERKNRDEFRKLVEGHVAAGTLTAKTHWRDYCMMVKDSPPFLAVASNTSGPTPKDLFEDVAEELQKQYDDDKARVKDAVKLRKICLASTWTLEDLKAAILEDISSPPISDVNLKLIFEELLERVKEKEEKEAKKRKRLADDFFDLLHSMKEITSSSAWEDCKHLLESSQEFSSIGDEDICKGIFDEYVKQLKGDAKEKERRRKEDKAKKEKERDERERRKEKHGRDKERGYEREKEEHLREEPSEAHGDISEVHDENENKRSGKEDSKKHRKRHQSSVDNSNETEKDRTKTHRHSSDRRKSKKHASTPESDNESRHKRHKRDHRNGSRRNLDPEELEDGEFGERESQ
Length994
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-1.006
Instability index59.90
Isoelectric point6.13
Molecular weight112950.49
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02870
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     486.67|      66|      66|     513|     578|       1
---------------------------------------------------------------------------
  446-  507 (77.96/51.54)	AFKALLESA....NVGSDWTWD....QAMRV................I.IN.DKRYG.....ALRTL.GE...RK....QAFNEF...LGQKK....KQ...DAEERRI...KQ
  513-  578 (106.59/73.74)	EYKKMLEECL...ELTSSTRWS....KAVTM................F.EN.DERYK.....AVERE.KD...RK....DFFENYIDELRQKE....RV...KAQEQRK...QN
  581-  652 (76.56/50.46)	EYRRFLESCD...FIKANSQWR....KVQDR................L.ET.DERCS.....RLDK..ID...RL....EIFQEYIRDLEKEEeeqrRI...QKEELRKterKN
  655-  721 (67.32/43.29)	EFRKLVEGHVaagTLTAKTHWR....DYCMM................V.KD.SPPFL.....AVASN.TSgptPK....DLFEDVAEEL.QKQ...........YDDDK...AR
  724-  811 (36.86/19.67)	DAVKLRKICL...AST....WTledlKAAILedissppisdvnlkliF.EElLERVK....eKEEKEaKK...RKrladDFF....DLLHSMK....EItssSAWEDCK...HL
  817-  875 (58.67/36.58)	EFSSIGDE.....DICKG............I................F....DEYVKqlkgdAKEKE.RR...RK....EDKAKKEKERDERE....RR...KEKHGRD...KE
  877-  941 (62.71/39.72)	GYEREKEEHL...REEPSEAHG....DISEV................HdEN.ENKRS.....GKEDS.KK...HR....KRHQSSVDNSNETE....KD...RTKTHRH.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.24|      39|      40|     189|     227|       2
---------------------------------------------------------------------------
  189-  227 (76.37/46.55)	PKPTEEALTDWIEHTSANGRRYYYNKKTRQSSWEKPLEL
  230-  268 (74.87/45.50)	PIERADASTNWKEYTSPDGRKYYYNKVTNLSTWSLPEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.66|      13|      17|       3|      18|       3
---------------------------------------------------------------------------
    3-   15 (29.29/ 9.19)	PSQNFPPPMSGQF
   72-   84 (22.37/ 7.69)	PGHILPPPPSVSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|      94.15|      12|      17|      85|      96|       4
---------------------------------------------------------------------------
   20-   31 (20.48/10.42)	PSQQ.PQQFVSVP
   37-   48 (15.90/ 6.41)	PVGR.GVTVMNAG
   50-   61 (19.54/ 9.60)	PSQT.PQPQIPQV
   85-   96 (21.75/11.53)	PAAQ.PNLHVNPG
  102-  113 (16.49/ 6.93)	PNIQaPNNYF.PG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.85|      14|      18|     318|     335|       6
---------------------------------------------------------------------------
  318-  334 (17.71/13.60)	SPVPVApvpSSSKIESV
  339-  352 (23.14/ 9.15)	SDLPVA...TSSTVTNV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.33|      25|      34|     386|     410|       7
---------------------------------------------------------------------------
  386-  410 (40.18/23.70)	MNNISKVSSLDMVSSEGVSTQNADE
  421-  445 (39.15/22.92)	INNALEEKAIDQESLTYASKQEAKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.12|      13|      24|     944|     960|       8
---------------------------------------------------------------------------
  944-  956 (22.08/ 6.09)	DRRKSKKHASTPE
  969-  981 (23.04/11.67)	DHRNGSRRNLDPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.00|      11|      24|     126|     137|       9
---------------------------------------------------------------------------
  126-  137 (17.04/15.68)	APS..SYGQVTVsH
  151-  163 (16.96/ 9.32)	APNvpVGGQVGI.H
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02870 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AQYQPMAQLQAPNVPVGGQVGIHVSQSTSVTSAQQIGEQPSASTATIPPKPTEEALTDWI
2) DAKEKERRRKEDKAKKEKERDERERRKEKHGRDKERGYEREKEEHLREEPSEAHGDISEVHDENENKRSGKEDSKKHRKRHQSSVDNSNETEKDRTKTHRHSSDRRKSKKHASTPESDNESRHKRHKRDHRNGSRRNLDPEELEDGEFGERESQ
3) LAREQVEMASAKGPLSDVSSHIPAPVPPASKAQSGADTPSTIIQGASSSP
4) MDPSQNFPPPMSGQFRPVVPSQQPQQFVSVPPQQFQPVGRGVTVMNAGFPSQTPQPQIPQVMQQLPARPGQPGHILPPPPSVSLPAAQPNLHVNPGASVPQPNIQAPNNYFPG
141
841
270
1
200
994
319
113










Molecular Recognition Features






MoRF SequenceStartStop




1) ELEDGEF
982
988