<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02868

Description Uncharacterized protein
SequenceMARRNGERKEHSAMVAVGIDKDKGSQYALKWTVDHLLSKGQSINLVHVKTKPSSIPTPSGLLTNISKVNDDVAKAYMQQVDNQAKEVFLPFRCFCSRKDITSNEIILEDTDIAKALIDYVSSSSIEILVLGAPTKGGFIRFRSTELTTTVSKGAPNYCTVYVIGKGKISSVRSASAPPPARHHPPAPQPQQPPPSIIPEITESPSGQALFPRYRGAPSRSQHPPRNMYEDLEMKSPFTRPRNKYEPSVPESDISFVSSGRPSTDNMSSLHDNMDFGTQRLSISSEYDSISLGSSYSGNRSIDFSSQYESSSTSHESGRTSWSSQNMMPQDDVEAEMRRLKQELKQTMEMYSAACKEALSAKQRAKELQSWKLQEEQKIEEARLAEEAALSLAEKEKAKCQVAIEAAQAAQMIAELEAQKRKIVEKNANKEADDRKLAINNFGHDLRYRKYTIQEIETATDLFSPSRKIGEGGYGPVYHCNLDHTPVAIKVLRPDAAQGQLQFQQEVEVLCCIRHPNMVLLLGASPEYCCLVYEYMANGSLEDRLFRRNNSPVLPWQVRFRIAAEIATGLLFLHQTKPEPIVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADTVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQIITAKPPMGLTHHVENAIENGNFAGILDPAVHDWPMEETLIFAKLALKCSELRRKDRPDLGRVVLPELDKLRTLADEKMPFIKIGGSAGTSPNNSHVSTSSIQVKL
Length763
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.454
Instability index51.07
Isoelectric point7.58
Molecular weight84901.67
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02868
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.59|      25|      29|     186|     214|       1
---------------------------------------------------------------------------
  186-  213 (45.19/30.03)	APQPQQPPPSIIPEITESPSGqalF..PR..Y
  216-  244 (40.39/16.57)	APSRSQHPPRNMYEDLEMKSP...FtrPRnkY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.26|      12|      19|     270|     288|       2
---------------------------------------------------------------------------
  270-  288 (17.87/24.88)	HDN..MDFgtqrlsiSSEYDS
  296-  309 (18.39/ 8.83)	SGNrsIDF.......SSQYES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.15|      28|      30|     338|     365|       3
---------------------------------------------------------------------------
  338-  365 (44.53/33.79)	RLKQELKQTMEMYS..AACKEALS..AKQRAK
  371-  398 (32.50/22.57)	KLQEE..QKIEEAR..LAEEAALSlaEKEKAK
  400-  429 (34.12/24.08)	QVAIEAAQAAQMIAelEAQKRKIV..EKNANK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     118.66|      27|      48|     453|     479|       4
---------------------------------------------------------------------------
  453-  479 (47.42/42.79)	QEIETATDLFSPSRKIGEGGYGPVYHC
  482-  502 (24.74/17.55)	DHTPVAIKVLRPDAAQGQLQF......
  504-  529 (46.50/41.76)	QEVEVLCCIRHPNMVLLLGA.SPEYCC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.84|      18|      37|      71|      88|       5
---------------------------------------------------------------------------
   71-   88 (30.68/18.90)	DVAKAYMQQVDNQAKEVF
  111-  128 (28.16/16.84)	DIAKALIDYVSSSSIEIL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02868 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GQALFPRYRGAPSRSQHPPRNMYEDLEMKSPFTRPRNKYEPSVPESDISFVSSGRPSTDNMSSLHDNMDFGTQRLSIS
2) RSASAPPPARHHPPAPQPQQPPPSIIPEITESP
3) SIDFSSQYESSSTSHESGRTSWSSQNMMPQDDVEAEMRRLKQE
206
172
300
283
204
342










Molecular Recognition Features






MoRF SequenceStartStop




NANANA