<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02867

Description Uncharacterized protein
SequenceMDTNNWRPTPPSGEPSMDSGDWRTTLQPDSRQRIVNKIMDTLKRHLPFSGQDGLSELRKIAVRFEEKIFTAASSQTDYLRRISLKMLTMETKSQNTMPNTGNNSKPPDPGSQGMQNQVHSQGQSVPIPLQCNQSQAHQQLLPQSVPNNMASAGVQSSAGLQSGMPPVSGLSQNPISNVVGQNSNIQNMSGILQNSMGQGMPSNIFANQQRQMQGRQQVVPQQQQQQLYHQQLQQTLMKQKIQQGNLQSSLLQSHMQQQQQQNLLPPTQLQSSQQSGMQTSSIMQPSALQSTLPGLQQNQQSSLQQSTQSMLQQHQQSVLRQQQQPQQTTSAGIHQQQTPMTQQSMMPQQQQQQHMMGQQANAANIPQNQLIGQQNSIADMQQQRLLGQSSNLQQQQQQQQLMAQQNNLSNMHQQQLGPQSNISGLQQQQQQLVGTQSGNSSMQTNQQSLHMLSQPKVALQQTQQTAPNLLPTQGQTSQQPQQQQQLMSQMQSQPTQLQQQLGLQQQPNQVQQNMQQRLQASGQTSSSLLQSQNLIDQQKQLYQSQRAVPETSSTSLDSTAQTGHSNGGDWQEDVYQKIKAMKETYFSELNEMHQKISAKLLQHDSFPQQPKSEQLEKLKIFKTMLERILHFLTVSKANIVPAFKDKLSSYEKQILNFINTNRPRKPVSALQQGQLPPPHMHSMQQPQPQSNQTQSHDNQMNPQLQSINLQGSMPTMQPNNMTSLQHNTLSSLPGVSTAQQTMLNSLQPGSNLDPGQGNALGSMQQVAPGSLQQNPASTSQQANLNSLSSQSGLSVLQQNMNPLQSNSNMLQHQHMKQQQEQQILQSQKYKQQRQMQHQIMQQKHQLMQQQQQQAKQQLPTQLQAHQMPQLHQMNDVNDMKQGISVKPGVFQQHLPAGQRQTYTHQQLKPGAQFPISSPQLHPAASPQMPQHSSPQIDQQSLLPSISKTGTPLQSANSPFVVPSPSTPLAPSPMPGESEKPAPGTSSLSNAANIGHQQGTGVQAGSQSLAIGTPGISASPLLAEFTDGTHANVLTTVSSKSNITEQPLERLMKAVKSMSPTALCASVSDIGSVVSMTDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGMNGTKKMRRHTSAMPLNVVSSVGSINDSFKQLTGSETSDLESTATSTVKKPRIEVLCFAHGTFFLNVSS
Length1183
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.03
Grand average of hydropathy-0.829
Instability index77.21
Isoelectric point9.67
Molecular weight130319.46
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02867
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.47|      32|      38|     717|     752|       7
---------------------------------------------------------------------------
  310-  346 (36.38/ 6.41)	MLQQHQQSVLrqqqQPQQTTSaGI...HQQQ.TPMTQQSM..M
  734-  771 (31.09/ 6.44)	GVSTAQQTML....NSLQPGS.NLdpgQGNAlGSMQQVAPgsL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     389.22|      51|      77|      93|     143|       8
---------------------------------------------------------------------------
   93-  132 (60.57/13.41)	...........SQNTMPN...TGNNSKPPDPG.SQG..MQ....NQVHSQGQSVPIPLQCN
  133-  168 (47.61/ 8.71)	QSQAHQQLLPQ..............SVPNNMA.SAG..VQ....SSAGLQSGMPPVS....
  494-  532 (57.71/12.37)	PTQLQQQLGLQ.QQ..PN....QVQ...QNM..QQR..LQ....A....SGQTSSSLLQSQ
  533-  588 (43.20/ 7.10)	NLIDQQKQLYQSQRAVPEtssTSLDSTAQ.TGhSNGgdWQ....EDVYQKIKAMKETYFSE
  647-  683 (52.15/10.35)	LSSYEKQIL....NFI.N...T..N.RPRKPV.SA...LQ.........QGQLPPPHMHSM
  684-  719 (63.84/14.60)	QQ.......PQPQ...SN....QTQSHDNQMN.PQ...LQ.....SINLQG.SMP.TMQPN
  846-  892 (64.13/14.70)	LMQQQQQQ.AKQQ..LP....TQLQAH..QM..PQL..HQmndvNDMK.QGISVKPGVFQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.68|      17|      34|     920|     951|      10
---------------------------------------------------------------------------
  917-  946 (18.79/24.21)	SPQLHPAASPqmpQhsspqidqqsLLPSIS
  949-  965 (30.88/ 8.63)	GTPLQSANSP...F..........VVPSPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.70|      15|     136|     257|     278|      12
---------------------------------------------------------------------------
  262-  278 (19.25/ 8.50)	NLLPpTQLQSSQQSGmQ
  468-  482 (28.45/ 7.09)	NLLP.TQGQTSQQPQ.Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.51|      27|      62|    1051|    1077|      14
---------------------------------------------------------------------------
 1016- 1044 (18.20/ 7.01)	.....SA....SP..LLAEFTDgthanvlttVSSKSNITE
 1051- 1077 (47.09/29.76)	MKAVKSM....SPTALCASVSD.........IGSVVSMTD
 1115- 1139 (24.22/11.75)	MNGTKKMrrhtSAMPL.NVVSS.........VGSI.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.86|      12|      15|       1|      12|      16
---------------------------------------------------------------------------
    1-   12 (27.55/21.48)	MDTNNWRPT..PPS
   17-   30 (21.31/14.48)	MDSGDWRTTlqPDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.52|      11|      15|     781|     791|      18
---------------------------------------------------------------------------
  781-  791 (18.97/ 7.43)	QANLNSLSSQS
  797-  807 (21.55/ 9.62)	QQNMNPLQSNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.44|      14|     101|     981|     996|      19
---------------------------------------------------------------------------
  981-  994 (23.27/15.18)	APGTSSLSNAANIG
  998- 1011 (23.17/ 7.46)	GTGVQAGSQSLAIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.02|      10|      28|     371|     380|      21
---------------------------------------------------------------------------
  371-  380 (18.29/ 7.85)	IGQQNSIADM
  402-  411 (18.73/ 8.26)	MAQQNNLSNM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02867 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KQLYQSQRAVPETSSTSLDSTAQTGHSNGGDWQEDV
2) MDTNNWRPTPPSGEPSMDSGDWRTTLQPDSRQRIVNKIMDTLKRHLPFSGQDGLSEL
3) NRPRKPVSALQQGQLPPPHMHSMQQPQPQSNQTQSHDNQMNPQLQSINLQGSMPTMQPNNMTSLQHNTLSSLPGVSTAQQTMLNSLQPGSNLDPGQGNALGSMQQVAPGSLQQNPASTSQQANLNSLSSQSGLSVLQQNMNPLQSNSNMLQHQHMKQQQEQQILQSQKYKQQRQMQHQIMQQKHQLMQQQQQQAKQQLPTQLQAHQMPQLHQMNDVNDMKQGISVKPGVFQQHLPAGQRQTYTHQQLKPGAQFPISSPQLHPAASPQMPQHSSPQIDQQSLLPSISKTGTPLQSANSPFVVPSPSTPLAPSPMPGESEKPAPGTSSLSNAANIGHQQGTGVQAGSQSLAI
4) QGNLQSSLLQSHMQQQQQQNLLPPTQLQSSQQSGMQTSSIMQPSALQSTLPGLQQNQQSSLQQSTQSMLQQHQQSVLRQQQQPQQTTSAGIHQQQTPMTQQSMMPQQQQQQHMMGQQANAANIPQNQLIGQQNSIADMQQQRLLGQSSNLQQQQQQQQLMAQQNNLSNMHQQQLGPQSNISGLQQQQQQLVGTQSGNSSMQTNQQSLHMLSQPKVALQQTQQTAPNLLPTQGQTSQQPQQQQQLMSQMQSQPTQLQQQLGLQQQPNQVQQNMQQRLQASGQTSSSLLQ
5) RRISLKMLTMETKSQNTMPNTGNNSKPPDPGSQGMQNQVHSQGQSVPIPLQCNQSQAHQQLLPQSVPNNMASAGVQSSAGLQSGMPPVSGLSQNPISNVVGQNSNIQNMSGILQNSMGQGMPSNIFANQQRQMQGRQQVVPQQQQ
539
1
661
243
80
574
57
1010
530
224










Molecular Recognition Features






MoRF SequenceStartStop




NANANA