<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02857

Description Uncharacterized protein
SequenceMDTNNWRSTPPSGEPTMDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLTMENKSQNTVPNTGNNSKPPDPGSQGMQNQVHSQGQSIPISLQCNQSQAQLLPQSVPNNMASAGVQSSAGLQSGMPAVSGLTQNPVPNVVGQNTNMQNMSGISQNSLGQGMSSNMFANQQRQMPRQQVLPQQQQQQQQQQLYHQQLQNQLIKQKLQQGNLQPSLMQSHMQQQQNLLPPTQLQSSQQSGMQTSSVIQQSSMQSTPLPGLQHNQQSSLQQSSQSMLQQHQQFRQQQQAQQAASSGIHQQQTPMTQQSMMPQQQHQHQQPHIMGQQTNAANSQQNQLIGQQNSIADMQQQRLLGQANNLPNLQQQQQQQQQLMAQKNNMSNIHQQQLGPQSNSSGLQQQQQPHLIGAQSGNSSMQANQQSLHMLPQPKVQLQTQQSSPNLLPPTQVQTSQQPQQQQQQQLMSQMQTQSTLQQQLGLPQQHNMPQRLQASGQVSSSLLQSQNLTEQQKQLYQSQRAVPETSSTSLDSTAQTGLANGGDWLEEVYQKILTLKETYLPELNEMYQKIATKLQQHDSNPAQPKSEQLEKLKIFKTMLERIISFLTVSRANITPPFKEKLSSYEKQIINFINSNRPRKPVSVQQQGQLPPPHMHSMQQQQQSQISQTQSHDNQMNPQLQSMNLQGSVPTMQPNNMTSMQHNSLSPGVSTAQQTMLNSLQPGSSLDSGQGNALGPVQQVAPGPLQQNPVSTSQQTNFNSNSLSSQSGLSVLPQNINPLQSNSNMLQHQHMKQQQEQQMLQSQKYKQQFQRQMQHQHIQQKQQLLQQQQQQQQQRQQQQQQQAKQQLSTHQMSQLHQMNDVNDMRQGMGVKPGVFQHLPAGQRQSYTHQQLKPGAQFPVSSPQLLQAASPQIPQYSSPQVDQQNLPSISKTGTPLQSANSPFVVPSPSTPLAPSPMPGESEKPVLGTSLPNVANLGHQQGTGVQTGSQSLAIGTPGISASPLLAEFSGADGTHANALTAVSSKSNVTEQPLERLIKAVKSISPTALGASVSDIGSVVSMTDRIAGSAPGNGSRAAVGEDLVAMTKCRLQAKNFISQDGMSGTKKIRRYTSAMPLNVVSSAGSLNDSFKQLTGSETSELESTATSSVKRPRIEVLFVAHGACFHESILLCF
Length1197
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.03
Grand average of hydropathy-0.848
Instability index77.13
Isoelectric point9.65
Molecular weight132040.97
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02857
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     679.43|      74|      87|     187|     260|       1
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   71-  137 (71.10/11.67)	AATSQSDYL.K........RISLKM............................LTMENKS....QNTVPNTG...........NNSKPPDPGSQGM......Q..NQV..................HSQGQSI...PISLQCNQ.SQAQ
  187-  260 (137.84/32.28)	SGISQNSLG.Q........GMSSNM............................FANQQRQ.MPRQQVLPQQQ...........QQQQQQQLYHQQL......Q..NQL...IKQK...........LQQGNLQ...PSLMQSHM.QQQQ
  261-  315 (72.21/12.01)	NLLPPTQLQ.............................................SSQQSG.MQTSSVI..QQ...........SSMQSTPLPGLQ.......H..N.....................QQSSLQ...QS.SQSML.QQHQ
  317-  405 (87.17/16.63)	..FRQQQQA.Q........QAASSG............................IHQQQTP.MTQQSMMPQQQ...........HQHQQPHIMGQQTnaansqQ..NQL...IGQQnsiadmqqqrlLGQANNL...PNLQQQQQ.QQQQ
  414-  453 (53.34/ 6.18)	SNIHQQQLGpQ........SNSSGL..........................................................QQQQ...............Q..PHL...IGA.............QSGN......SSMQA....NQQ
  459-  514 (77.18/13.54)	PQPKVQLQT.Q........QSSPNL....................................LPPTQVQTSQQ...........PQQQQQQ................QL...MSQM...........QTQSTLQ...QQL...GL.PQQH
  607-  729 (54.38/ 6.50)	SNPAQPKSE.QleklkifkTMLERIisfltvsranitppfkeklssyekqiinFINSNR...PRKPVSVQQQgqlppphmhsmQQQQQSQISQTQS......H..DNQ...MNPQ...........LQSMNLQgsvPTMQPNNMtSMQH
  797-  849 (72.03/11.96)	SVLPQNINP.L........QSNSNM............................LQHQHMK........QQQE...........QQMLQSQKYKQQF......Q..RQM...QHQ............................HI.QQKQ
  882-  950 (54.19/ 6.45)	..LHQ...............MND...............................VNDMRQgMGVKPGVFQHL...........PAGQRQSYTHQQL......KpgAQFpvsSPQL...........LQAASPQ...IPQYSSPQ.VDQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.14|      12|      15|       1|      12|       2
---------------------------------------------------------------------------
    1-   12 (26.56/15.72)	MDTNNWRS..TPPS
   17-   30 (21.58/11.35)	MDTGDWRTqlQPDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.00|      20|      22|    1068|    1087|       3
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 1068- 1087 (34.06/23.43)	ISPTALG.ASVSDIG.SVVSMT
 1090- 1111 (25.94/15.98)	IAGSAPGnGSRAAVGeDLVAMT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.02|      16|      33|     952|     976|       4
---------------------------------------------------------------------------
  952-  972 (14.77/15.87)	LpSIsktGTPLQSAnSPFVVP
 1017- 1032 (26.25/11.94)	L.AI...GTPGISA.SPLLAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.44|      10|      17|     573|     582|       6
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  573-  582 (18.18/13.13)	LEEVYQKILT
  591-  600 (19.26/14.37)	LNEMYQKIAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.96|      20|      28|     518|     537|       7
---------------------------------------------------------------------------
  518-  537 (32.22/13.64)	QRLQASGQVSSSLLQSQNLT
  545-  564 (32.74/13.99)	QSQRAVPETSSTSLDSTAQT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02857 with Med15 domain of Kingdom Viridiplantae
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