<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02856

Description Uncharacterized protein
SequenceMQPPGTDMTGICFRDQLWLNTYPLDRNLIFDYFALSPFYDWTCNNEKLRMQSIHPLDISQLSKMTGIEYMLSEVMEPHLFIIRKQKRDSAEKVTPMLAYYILDGSIYQAPQLCNVFAARVGRALYYISKAFTTAASKLEKIGYGDTENESETSEPKGGKETIDFKEVKRVDHILASLQRKLPPAPPPPPFPDGFVPPTTEAEKEPENQQTTEPQPPAVDPIIDQGPAKRMKF
Length232
PositionHead
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.10
Grand average of hydropathy-0.523
Instability index56.07
Isoelectric point5.35
Molecular weight26376.89
Publications
PubMed=23257886
PubMed=30476109

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02856
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.46|      24|      57|     145|     169|       1
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  145-  169 (36.80/31.03)	DTENEsETSEPK..GGKETIDFKEVKR
  204-  229 (38.66/27.29)	EPENQ.QTTEPQppAVDPIIDQGPAKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.65|      16|      30|       4|      25|       2
---------------------------------------------------------------------------
    4-   21 (27.54/16.84)	PGTDMTgiCFRDQLWLNT
   37-   52 (32.11/18.11)	PFYDWT..CNNEKLRMQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.13|      11|      24|      90|     101|       3
---------------------------------------------------------------------------
   90-  101 (16.93/17.32)	AEKVTPMLaYYI
  117-  127 (20.20/14.57)	AARVGRAL.YYI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02856 with Med6 domain of Kingdom Viridiplantae
Unable to open file!