<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02855

Description Uncharacterized protein
SequenceMDQTQRSVAAAANSRTYQFHPARAAITDLFNLYLGRNSRQKADDSVREPPNKTQKRVLALNRELPPRNEQFLLDFEQLQTQFGDQDQLQSVTESVLISLVIQCCSHAPRAEFLLFALRSLCSIGYVNWDTFLPSLLSSVASAEGPVSQGSQGVPSVSSSVSQSGMLPSTSVIANASNFQSANAASTLTSVHVIGSPAQSTIEPSSGATLSPVKLSDIACNGQPSTTRMDSSIRDNAISNLRQLCCKMILTGLECNLKPVTQAEIFHHMLNWLVNWDQRQHGNEECDGKSWRLEKALIEWLHCCLDVIWLLVEEDKCRVPFYELLRSGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNVSVEGVANLRYSPITYPSVLGEPLHGEDLAASIQRGSLDWERALRCIRHAIRSTPSPDWWKRVLVVAPFYRGSVPTPGAVFTCDMICEGTIDRIVELLKLTNSEINCWQEWLVFSDIFFFLMKSGCIDFVDFIDKLGSRLSASDHHILNTNHVTWLLAQIIRVEHVMTALNTDSRKVETTRKILSFHREDRSSDPNNPQSILLDFISSCQNLRIWSLNTSTRDYLNNEQLQKGKQIDEWWRQVSKGERMMDYMSMDDKSIGMFWVVSYTMAQPACETVMNWLSSGGVTELLPGANVQPNERFMVMREVSPLPISLLSGFSMNLYLKLVFQMEESLFAGQVVPSIAMVETYTRLLLIAPHSLFRSHFSHLAQRNASLLSKPAVTLLVLEIVNYRLLPLYRYQGKCKPLMYDVTKIISALKGKRGDHRVFRLAENLCINLILSLRDFFSVKREGKGPTEFTETLNRITIITLAITIKTRGIADADHLLYLQTMLEQILATSQHRWSEKTLCYFPSILRDLLMTRTDKRGLAIQEWQQSETTVINQCTQLLSSSTEPNYVMTYLNRSFPQHRQYLCAGAWILMQGHPENINSGNLARVLREFSPEEVTSNIYTMVDVLLHHIHIELQHGHSLQDLLLKTCANLAFFVWTHELIPLDILLLALIDRDDDPHALRIVISLLDRQELQQRVKLYCMNRGPPEHWLYTGIFKRSDLQNALGNHLSWKERYPTFFDDIVARLLPVIPLVVYRLIENDAIESADRMLGMYSLFLAYHPLRFTFVRDILAYFYGHLPGKLIVRILNVLDLSKIPFSESFPQHISSSNPAICPPPEYFATLLLALVNNVIPPLNSNSRTGSMGDASNNSVRGPHNKTPATPQSGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPISASQIVSSLIQIVVNIQPTLIQSSNGLHGASSGAVQGSVLPTSPSGGSTDSAGRSTPSVSGINTSSFVSRSGYTCQQLSCLFIQACGLLLAQLPPEFHLQLYMEASRIIKESWWLTDGKRSLSELDSAVSYALLDPTWASQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIQQLRPVTSVAMLRIAFRIMGPLLPRLVTAHNLFNKILSLLLNTLVDVFGKNTQPPVPVEASEITDLIDYLHHIIHYEGQAGPVQANSKPRPEVLSICGRAAESLRPDVQHLLTHLKPDVNSSIYAATHPKIAQNPS
Length1602
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.08
Grand average of hydropathy-0.067
Instability index49.12
Isoelectric point6.40
Molecular weight179909.49
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02855
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.20|      25|     542|     983|    1008|       1
---------------------------------------------------------------------------
  983- 1008 (43.21/27.18)	PEEvTSNIYTMVDVLLHHIHIELQHG
 1523- 1547 (47.00/25.73)	PVE.ASEITDLIDYLHHIIHYEGQAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     192.34|      50|     179|     285|     334|       3
---------------------------------------------------------------------------
  285-  334 (93.97/69.13)	CDGKSWR...LEKALIEW...LHCCLDVIWLLVEED.KCRV....PFYELLRSG.LQFIENI
  420-  456 (30.86/16.85)	...............LDWeraLRCIRHAIRSTPSPDwWKRVlvvaPFYR....G......SV
  469-  515 (67.50/47.20)	CEGTIDRiveLLKLTNSE...INCWQE..WLVFSD..........IFFFLMKSGcIDFVDFI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.34|      18|      18|     133|     150|       4
---------------------------------------------------------------------------
  117-  130 (19.93/ 9.11)	...LRSLCSI.GYVNWDT
  133-  150 (30.60/18.37)	PSLLSSVASAEGPVSQGS
  154-  170 (28.82/16.83)	PSVSSSV.SQSGMLPSTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.52|      19|     544|     533|     558|       6
---------------------------------------------------------------------------
  536-  557 (30.04/34.72)	TWLLAQiirVEHVMTALNTDSR
 1211- 1229 (33.49/13.20)	TLLLAL...VNNVIPPLNSNSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.53|      34|     179|    1106|    1144|       7
---------------------------------------------------------------------------
 1106- 1144 (49.73/45.06)	PTFFDDIVARLlpvIPLVVYrlIENDAIESADRMLGMYS
 1291- 1324 (56.80/35.92)	PISASQIVSSL...IQIVVN..IQPTLIQSSNGLHGASS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.35|      24|     122|     669|     698|      24
---------------------------------------------------------------------------
  669-  692 (41.40/37.34)	VTELLPGANVQPNERFMVMREVSP
 1054- 1077 (39.95/20.96)	VISLLDRQELQQRVKLYCMNRGPP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02855 with Med23 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NSRTGSMGDASNNSVRGPHNKTPATPQSGPANASEGQKAF
1227
1266










Molecular Recognition Features






MoRF SequenceStartStop




1) LFNLYLGR
29
36