<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02846

Description Uncharacterized protein
SequenceMQPPPLPVPQGALSSSASFSFTPNPQLVQNAQIQPSKSDTLATGTQAMAASSPSTVSQSGPLPVHNSSEFTMNASTTPSFAPVTSRMPTTPPFPMSSGSSGTSGTPGHPGSIPSIQMITASAAVDSPSSAVPGPGAPVSLNPAVQQQVYPPYTSLPSMVSSPQGYWMQHPPMGGFPRPPFVPYPTVYPGPFPSTSSGMPLPAPSSDSQPPGVRPLGMSPFAPSAAALANQSLAILTGFPPQGIDNRKLVHDVTTKVESAGNEQSDVWTAHKTDTGVVYYYNALTGESTYEKPAGFKGEPDQVTVQPTPVSVEQLAGTDWALVTTNDGKKYYYNSKTKVISSWQIPNEVTELRKKQDSEVSKENAVSVPNIDVVAEKGSTPISLSAPAVNTGGRDAMPLRTSVVPGSSSALDLIKKKLQDPGVPSSSPVPVVPVTATHELNGSRAVDVKGLQSESNKDKLKDANGDGSISDSSSDSEDADSGPSKEECIMQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDHDTNYQTFKRKWGSDPRFEALDRKDRELLLNERVLLLKRAAEEKARAIRAAAASSFKSMLKEKGDINVNSRWSRVKDSLRDDPRYKCVKHEDREVLFNEYISELKAIEEKAERKDKVKKEEEEKLKERERELRKRKEREEQEMERVRLKVRRKEAVASFQALLVETIKDPQASWTESKPKLEKDPQGRAANPDLDSSDMEKLFREHIKMLFERCVNDFRALLAEVITQDATAQETEGGKTALNSWSTAKRLLKPDPRYNKMPRKEREALWRRYAEDMLRKQKSALDQEEEKHTDVKGRSSGGDFGRYSSGTRRTHERR
Length888
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.765
Instability index55.06
Isoelectric point8.67
Molecular weight97960.88
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02846
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     285.38|      53|      58|       2|      54|       1
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    2-   43 (59.58/23.24)	..............QPP.PLPVPQGA...LSSSASFSFTPNPQLVQNAQIQPSKSDTLAT
   44-  102 (72.54/29.96)	GTQAMAASSPStvsQSG.PLPVHNSSeftMNASTTPSFAPVTSRMPTTPPFPMSSGSSGT
  104-  147 (52.87/19.77)	GTPGHPGSIPS......iQMITASAA...VDSPSSAVPGPGAPVSLNPAVQQQ.......
  156-  196 (62.51/24.76)	...............PS.MVSSPQGY...WMQHPPMGGFPRPPFVPYPTVYPGPFPSTSS
  197-  232 (37.88/12.00)	G...MPLPAPSsdsQPP.GV.RPLGM...SPFAPSAAALANQSL................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     463.50|      64|      65|     553|     616|       2
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  488-  548 (74.43/40.52)	..IMQFKEMLKE..RGVAPFSK.WEKELPKIVFDPRFKA....IpSHSARRSLFEHYV.K..TRAEEERkeKR
  553-  616 (102.22/58.32)	AAIEGFKQLLDEASEDIDHDTN.YQTFKRKWGSDPRFEA....L.DRKDRELLLNERV.LLLKRAAEEK..AR
  621-  682 (94.24/53.21)	AAASSFKSMLKE.KGDINVNSR.WSRVKDSLRDDPRYKC....V.KHEDREVLFNEYI.SELK.AIEEK..AE
  687-  725 (43.58/20.75)	VKKE.......EEE.............KLK...EREREL....R.KRKEREEQEMERV.RLKVRRKEA.....
  726-  789 (72.27/39.13)	..VASFQALLVETIK..DPQAS.WTESKPKLEKDPQGRAanpdL.DSSDMEKLFREHIkMLFERCVND...FR
  794-  849 (76.76/42.01)	EVIT..QDATAQETEGGKTALNsWSTAKRLLKPDPRYNK....M.PRKEREAL........WRRYAEDM..LR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.64|      14|      16|     394|     408|       3
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  394-  407 (25.34/17.25)	DAM..PLRTSVVPGSS
  411-  426 (20.30/ 6.61)	DLIkkKLQDPGVPSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.92|      26|      50|     267|     292|       4
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  267-  292 (49.49/32.01)	WTAHKTDTGVVYYYNALTGE.STYEKP
  319-  345 (45.43/28.81)	WALVTTNDGKKYYYNSKTKViSSWQIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.67|      14|      15|     449|     463|       6
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  449-  463 (19.78/18.05)	GLQSESNKDKlKDAN
  466-  479 (23.88/16.19)	GSISDSSSDS.EDAD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02846 with Med35 domain of Kingdom Viridiplantae
Unable to open file!