<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02843

Description Uncharacterized protein
SequenceMRPPRGRGGGFRGRGDGGRGRGRGGGGGRGGDRGGSGMKPRGGGRGGGRGRGGGRGGMKGGSKVVVEPHRHEGVFVAKGKEDALVTKNMVPGEAVYNEKRIAVQNEDGTKVEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDVVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVVGGYRMPKKQKAGAA
Length303
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.426
Instability index31.22
Isoelectric point10.20
Molecular weight32229.49
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
methyltransferase activity	GO:0008168	IEA:UniProtKB-KW
RNA binding	GO:0003723	IEA:UniProtKB-KW

GO - Biological Process
methylation	GO:0032259	IEA:UniProtKB-KW
rRNA processing	GO:0006364	IEA:UniProtKB-KW









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02843
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.97|      15|      15|      23|      37|       1
---------------------------------------------------------------------------
   17-   35 (29.18/ 9.53)	GGrgrgRGGGGGRGGDRG.G
   36-   52 (25.79/ 7.59)	SG...mKPRGGGRGGGRGrG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.69|      15|      17|     183|     199|       2
---------------------------------------------------------------------------
  183-  199 (21.96/23.67)	AKKR.....TNVipIIEDARHP
  200-  219 (20.73/13.68)	AKYRmlvgmVDV..IFSDVAQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     182.04|      55|     159|      73|     130|       4
---------------------------------------------------------------------------
   73-  130 (85.36/71.90)	GVFVAKGKEDALvtKNMVPGEAVYNEKRIAVQNEDGTKVEYRVWNPFRSKlAAAILGG
  237-  291 (96.69/69.84)	GHFVISIKANCI..DSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERD.HACVVGG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02843 with Med36 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MRPPRGRGGGFRGRGDGGRGRGRGGGGGRGGDRGGSGMKPRGGGRGGGRGRGGGRGGMKGGSKVVVEPHRHE
1
72










Molecular Recognition Features






MoRF SequenceStartStop




1) MRPPRGRGGGFRGRGDGGRGRGRGGGGGRGGDRGGSGMKPRGGGRGGGRG
1
50