<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02842

Description Uncharacterized protein
SequenceMANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQVPSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQFAPSSFGLPQNNVSAPSQFHPISQVHAPVAPVAGQPWLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKKEREREREKGKDRSKKDETDSENLDISDSHGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ
Length675
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.05
Grand average of hydropathy-1.081
Instability index61.62
Isoelectric point8.29
Molecular weight74706.43
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02842
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     119.45|      34|      35|     586|     620|       1
---------------------------------------------------------------------------
  549-  579 (44.73/19.85)	RKKEREREREKGK....DRSKKDETDSENLDISDS
  586-  620 (53.46/28.48)	KKKEKEKDRKHRKRHAaDDGSSDKDDREESKKSRR
  622-  643 (21.26/ 6.28)	.....GSDRKKSRKHA.HSPDSDSESRH.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     123.27|      20|      21|      24|      43|       2
---------------------------------------------------------------------------
   18-   37 (35.47/15.60)	VGSMGP.............QSYGSPLS.....SQFRPV
   38-   57 (37.00/16.60)	VPTQQG.............QHFVPAAS.....QQFRPV
   70-   86 (29.12/11.46)	VQNQQM.............Q.FSQPM......QQFPP.
   87-  124 (21.68/ 6.62)	RPNQPGlstpsqqpiqfapSSFGLPQNnvsapSQFHPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     182.43|      36|      38|     174|     209|       3
---------------------------------------------------------------------------
  144-  169 (22.44/ 6.62)	NQNVSL.AT...P...tqHTSQQPPPSSADTNA............
  170-  203 (64.41/33.05)	NVP..S.LT...P.....QSSDWQEHTSADGRRYYYNKRTRQSSW
  204-  244 (56.49/28.06)	EKPLEL.MT...PieradASTVWKEFTTPEGRKYYHNKVTKESKW
  245-  284 (39.10/17.11)	TIPEELkLAreqA.....QAASSQGTPSGSGVAPQAPVATAVSAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.90|      23|      36|     287|     320|       4
---------------------------------------------------------------------------
  287-  309 (40.89/11.97)	PTTAIPVSSNTLQDSSPVSVTPV
  324-  346 (38.00/24.58)	PVAQSAAMSATGVQLPVVSVTPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.23|      14|      36|     310|     323|       5
---------------------------------------------------------------------------
  310-  323 (26.09/16.27)	ANPS.PTSVSGPTTG
  348-  362 (19.14/ 9.57)	AVPSrGSTVSAPSVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.51|      13|      22|     502|     523|       6
---------------------------------------------------------------------------
  502-  523 (16.78/25.64)	LEeskeltssmRWSKAQSLFEN
  530-  542 (22.72/11.68)	VE.........RARDREDLFEN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02842 with Med35 domain of Kingdom Viridiplantae
Unable to open file!