<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02840

Description Uncharacterized protein
SequenceMWTPRSSYGERREIRTNVGLVAVAIDKDKNSHNALKWAIDHLLQKGQTLILIHVKVKPFSPYTTPLPTSLTGLNQFSEMNGDLPLVYKDPDPQTRELFLPFRCFCTRKDIPCKDVVLEETDVAKALIEYVSQAGIEVLVVGASTRTGFLSKFKPTDISAMVSKNAPDFCSVYVISKSKISSMRSASRPAPAISPLRNHLLNQPGLMSTPPESHILPDNSSRAILDECRSPFNRGGQNVKPYLALPMPDTDISFVSSGRQSIDRMFPEFYDYQEASRTATTPRLSNVSDYESNFSFESMQFGRNSVDLSSPHNFSYVSQDSDNFSNLSTSMEDVEAEMRRLKLELKQTMEMYSNACKEALTAKQKARELQLWKLEEERRLEKARLAEEAALAIAEKEKAKSKAAMEAAEAAQRIAEIESQKRVNAEMKALKESVEKKKALDALAHSDFRYRKYTIEEIEAATEFFSEVLKIGEGGYGPVYKARLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMSNGSLEDRLFRRGNTSTLSWQLRFRIAAEIGTALLFLHQTKPEPIVHRDLKPANILLDRNFVSKISDVGLARLVPPSVADNVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDVYSLGIMLLQIITAKPPMGLTHHVQRAIEKGTFVQMLDPSIDDWPVQAALSFAKIALNCAELRRKDRPDLGKVVLPELNRLRLLAEETMHLTWEAGSPGHSPNYSQVSLQLEHSSCPNFLHSDEYSRSPPNENP
Length783
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.08
Grand average of hydropathy-0.377
Instability index47.08
Isoelectric point6.66
Molecular weight87911.36
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02840
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.00|      34|      34|     137|     170|       1
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  117-  151 (43.76/32.06)	LEETDVAkALIEYVSQAGIEVLVVGASTRTGFLSK
  152-  185 (56.24/43.51)	FKPTDIS.AMVSKNAPDFCSVYVISKSKISSMRSA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.10|      33|      34|     193|     225|       3
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  193-  225 (59.33/35.97)	SPLRNHLLN.QPGLMSTPPESHILPDNSSRAILD
  229-  262 (55.76/33.36)	SPFNRGGQNvKPYLALPMPDTDISFVSSGRQSID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.37|      19|      19|     381|     399|       4
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  381-  399 (30.82/19.92)	KARL.AEEAALAIAEKEKAK
  401-  420 (25.55/15.34)	KAAMeAAEAAQRIAEIESQK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.49|      27|      28|     323|     349|       5
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  323-  349 (43.69/29.71)	FSNLSTSMEDVEAEMRRL...KLELKQTME
  351-  380 (37.79/24.75)	YSNACKEALTAKQKARELqlwKLEEERRLE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02840 with Med32 domain of Kingdom Viridiplantae
Unable to open file!