<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02835

Description Uncharacterized protein
SequenceMISENRIRMLVMGGAADKHYSKYKPHKKVVDLKSKKAIFVRENAPNTCHTIWFLCKGLLIYTRKLSSDVTDTKVASSSLPASPNLESSENHFRSQSVILRQTSRVKPSTSAPDSLRRVRSENVYGHVGSTLGFPSPDGNEGLSTPWNRSDVEGSSNEWDGLSRSPQNSVLSSSSSNGMADAALVPYMGTEVNGNGLQSSLIPHAEGNFNLSSLPSIQDVTTDNTLYDQLQQVMAEATNSRREAFEEAMKRSEAEKDALVAIRKVKASEILYAQELKQRKEIEEALAKEKDKLGKMKNQRDEVRIELQAALGQKSSLENQIAESEKEVKELQEKIFSAVELLQNYKKERDELQMERDNALKEAEELRKSRAEPSGAHMHQFFTEFSFTEIEEATLNFDPSLKIGEGGYGSIYKGNLRHTTVAIKRLHSNSLQGPSEFQQEVDVLSKMRHPNLVTLIGACPDAWTLIYEYLPNGSLEDRLSCRGNSPPLSWQTRIRLATELCSVLIFLHSSKPHGIVHGDLKPANILLDANFVTKLSDFGICRLLSNNTTICCRTDPKGTFAYMDPEFLSTGELTQKADVYSFGVILLRLLTGRQALGIIKEVQYALDNGNLKNLLDPLAGDWPFVQAEQLANLALRCCEMNRRCRPDLSTDVWRVLEPMRASCGGSSSFQLGSEEQCHPPSYFICPIFQEVMQDPHVAADGFTYEAEALRGWLDSGHDTSPMTNIKLAHSNLVPNLALRSAIQEWLQQH
Length748
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.462
Instability index48.87
Isoelectric point6.01
Molecular weight83498.45
Publications
PubMed=23257886

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02835
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     234.40|      74|      82|       3|      84|       1
---------------------------------------------------------------------------
    3-   84 (114.57/85.06)	SENRIRmlvMGGAADKHYSKYKPHKKVVDlkSKKAIFVRENAPNTCHTIWFLC....KGL.LIYTRklsSDVTDTKVASSSLPASPN
   88-  166 (119.84/70.23)	SENHFR...SQSVILRQTSRVKPSTSAPD..SLRRVRSENVYGHVGSTLGFPSpdgnEGLsTPWNR...SDVEGSSNEWDGLSRSPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     147.12|      29|     102|     238|     266|       2
---------------------------------------------------------------------------
  238-  266 (44.33/27.54)	NSRREAFEEAM.KRSEAEKDALVAIRKVKA
  276-  300 (37.08/21.93)	KQRKE.IEEAL.AK...EKDKLGKMKNQRD
  301-  328 (25.52/12.99)	EVRIE.LQAALgQKSSLENQIAESEKEVK.
  343-  370 (40.19/24.34)	NYKKERDELQM.ERDNALKEA.EELRKSRA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.33|      21|     184|     458|     484|       5
---------------------------------------------------------------------------
  459-  484 (36.86/42.65)	PDAWTLIYEYL.PNgsledRLSCRGNS
  645-  666 (37.46/22.32)	PDLSTDVWRVLePM.....RASCGGSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.42|      10|      15|     176|     186|       8
---------------------------------------------------------------------------
  176-  186 (14.66/12.76)	NGMaDAALVPY
  194-  203 (18.76/11.03)	NGL.QSSLIPH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02835 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HVGSTLGFPSPDGNEGLSTPWNRSDVEGSSNEWDGLSRSPQNSVLSSSSSNG
126
177










Molecular Recognition Features






MoRF SequenceStartStop




NANANA