<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02826

Description Uncharacterized protein
SequenceMQRYHAPSCTSAVNNSAIGGASVRDTPRADSSSLPPNFSLNSRRQSQLAPYKLKCDKEHLNSRLGPPDFHPQTQNCPEETLTRENVQHGYKDTIDGLEDSKEISLTQVQAFTKPVVLKCRDAIRKCLRAINESRAQKRKAGQVYGVPLSGSLLSKPGVFPEQRPCNEDFRKKWIEGLSLQHKPLCSLADQVPLGYKKRPLIEVLIRNNVPLLKATWFIKVTYLNQVRPGSAISSGAPDKTQLSRTELWTKDVIDYLQYLLDEFFSRNNSHSTQHGRDRLPQIHYAGSLQHRSDLAPAVIDGEEPSLHFKWWYVVRLLQWHHAEGLVLPSLIIDWVLNQLQEKDLLEILQLLLPIIYGVLETIILCQTYVRNLVGVAIRFIREPSPGGSDLVDNSRRAYTISALVEMLRYLIQATPDTFVALDCFPLPTCVLSHTPSDGGFLSKPSDDAAKKNYTADAYAVRGKGFDSQYQSLSFNHVVSTVEKRADNLAKGATAGYPSQSVAKAVQTLDKALLQGDVIDAYKHIFNDLYDGAVGEGWVAEVSPSLRSSLKWLQTVNLSLICSVFFLCEWATCDYRDFRTAPPSDVKFTGSKDFSQIYLAIQLLKLKMKELQKKLKKGRASRKNTSQQNSYSSKDLLGDTHEAKSNGKGLNGRRRNFSDIFDSPGPLHDIIVCWIDQHEGHKGEGSKRLQLFMLELIRSGIFYPQAYVRQLLVSGIIDTNGPMADLNRRKRHQRILKQLPGQFMLNALEEARIAEGSELLEAINVYSNERLLVLQELFFDSYNNTNNSHALAKKLNCRPTLGRDVDSQVSCDKRRTVQASKTFRREVGLEELKASISVLLQFPSSSFCSADSGEDESQGSIKRSIGSTHSKMDSVEGTPGCEDCKRVKRLKLSEDETSCLKVYSPIPSDDDDTWWVRKGPKNLEGSKVDPLLKSTKQASRGRQKPVRKTQSLAQLAAARIEDSQGASTSHVCDNKISCPHHRTEVENLKPVDGIRTTHHADIISIGRGLKQLRFVEKRVVTIWLLSVVRQLVEESEKSVPKASQYGRPFVAADEKSPLRWKLGEDELSAILYLLDVSCDSASAVKFLLWLLPKAISNPSPAIHGGRNILMVPRNVENYACEVGEAYLLSSLRRYENILIAADLVPEALSATMRHVASFMATNGRITGSGALVFACYLLRRYGSIASVIEWEKNFKETCDKRLLSELESGRTEGEFGFPHGVPAGTEDPDDYCRQRINVGRLSRAGVSMRDMVQRRIDDVLHYILGKERKHFAANTQRSPATEKGDDDYQVAQQIIMGLMDCFRQTGGAFQEGDPGLVSSAVSAIVSNVGPTLAKIPDFTSGSTYSNYQPPMNYLNFAKRLLHIHLICLCLLKEALGERKSQAFEIALATEAFSALAVAFAPAKSSRGQLLSPDSLDSHANISNDNSHSSAKATLGRTTKMAAAVSALVIGAIIHGVISLERMVSVLRLKEGLDVVQFVRSTKTSSNGNARSVGAFKVDNSVEVYVHLFRLFVGNCRTVCDGLVLELLGEQSVLALSRMQRLLPINLVFPPAYAIFAFMIWKPFILNSNTARSEDIQQLYQSLTVAIGDAIKHRPFRDVCMRDTRGFYDIVAADTTDAEFAAMLELNGLDMHLKSMAFVPLRARLFLNAIIDCKMPNSAFTQDDGNRVSGHSESKALRAETSKLLDKLVCALDTIQPAKFHWQWVELRLLLNEQALIDKIENHDMSIVDAIRSSSPSSERATPSESEKVFIEIILTRLLVRPDAAPLFSEVVHLFGRSLEDSMLMQAKWFLGGLDVLLGRKTVRQRLSNIAENKNLSTKSQFWKPWGWSYSGVDPVTNSGEKRKSEVTSLEEGEVIEEGMESKGCVKGSTQVDIEGSGINQQHVTEKAFIELVIPCIDQSSADSHNTFASDLIKQFNTIEQQINSVTRGVSKQTGTASSGIEGPTNKINNRKGIRGGSPGLAKRTPAPVESAPPPSPAALRASMSLRLQFIVRLLPIICADGEPSARSMRNMLASVILRLLGSRVVHEDVDLSSNLAQLKRDMELMPVVASTEMSGDSLFDRLLLVLHGLLSSCKPSWLKSKDAKDFSGFDREAVEGLQVKENNQFSSSYKL
Length2110
PositionKinase
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.277
Instability index47.12
Isoelectric point8.67
Molecular weight234325.90
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02826
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     661.62|     311|     611|     481|     861|       1
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  481-  733 (216.18/311.34)	...........................................................................................................................................VEKRADNLakgatAGYPSQSVAKAVQTLDKALLQGDVIDAYKHIFNDLYD......GAVG.EGwvAEVSPSLRS.........................................................................................................................................................................................................................................................slkwlqtvnlslicsvfflcewatcdyrdfrtapPSDVKfTGSKDFSQiYLaiqllklkmkelQKKLKKGRASRKNTSQQNSYSSK..D....LLGD..THEAksngkgLNGRRRNFSDIFDSPGP.....LHDIIVCWiDQHEGHKGEGSKRLQLFMLELIRSGIFYPQAYVRQlLVSGIIDTN..GPMADLNRRKR..HQR
  734-  933 (220.02/172.88)	ILKQLPGQFMLNALEEARIAEG.SELLEAINVYSNERLLVLQELFFDSYNN..TNNSHALAKklncrPTLGRDVDSQVSCDK...RRTVQASKTFRREVGLEELKASISVlLQFPSSSFCSADsGEDESQGSIKrsigsTHSKMDSV.....EGTPGCEDCKRVKRLKLSEDETSCLKVYSPIPSDDDDtwwvrkGPKNlEG..SKVDPLLKS....................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1217- 1363 (125.40/75.60)	.....................................................................................................................................................................................................................tkqasrgrqkpvrktqslaqlaaariedsqgastshvcdnkiscphhrtevenlkpvdgirtthhadiisigrglkqlrfvekrvvtiwllsvvrqlveeseksvpkasqygrpfvaadeksplrwklgedelsailylldvscdsasavkfllwllpkaisnpspaihggrnilmvprnvenyacevgeayllsslrryeniliaadlvpealsatmrhvasfmatngritgsgalvfacyllrrygsiasvieweknfketcdkrllselesgrtegefgfPHGVP.AGTEDPDD.YC............RQRINVGRLSRAGVSMRDMVQRRidDvlhyILGKerKHFA......ANTQRSPATEKGDDDYQvaqqiIMGLMDCF.RQTGGAFQEGDPGLVSSAVSAIVSNVGPTLAKIPD.FTSGSTYSNyqPPMNYLNFAKRllHIH
 1369- 1495 (100.03/50.06)	LLKEALGERKSQAFEIALATEAfSALAVAFAPAKSSRGQLLSPDSLDSHANisNDNSHSSAK.....ATLGRTTKMAAAVSAlviGAIIHGVISLERMVSVLRLKEGLDV.VQFVRSTKTSSN.GNARSVGAFK...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     191.74|      64|     900|      76|     148|       2
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   76-  148 (93.95/80.17)	CPEETLTRENVQhgykdTIDGLEDSKE...IS....LTQVQAFTKPVV.LKCRDAIRKclrAINESRAQKRKAGQvYGVPL
  977- 1048 (97.79/59.21)	CPHHRTEVENLK.....PVDGIRTTHHadiISigrgLKQLRFVEKRVVtIWLLSVVRQ...LVEESEKSVPKASQ.YGRPF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     252.35|      82|      92|     169|     260|       4
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  169-  260 (121.15/104.07)	FRKKwiEGLSLQHKplcslADQVP.LGY.....KKRPLIEVLIRNNVPLLKATWFIKVTYLN.QVRPGSAISSGAPDKTqLSrtELWTKDVIDYLQYLL
  264-  352 (131.20/82.50)	FSRN..NSHSTQHG.....RDRLPqIHYagslqHRSDLAPAVIDGEEPSLHFKWWYVVRLLQwHHAEGLVLPSLIIDWV.LN..QLQEKDLLEILQLLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.12|      47|      63|    1636|    1683|       5
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 1636- 1683 (74.93/55.36)	FVPLRARLFLNAIIDcKMPNSAFTQDDGNRVSGHSESKALRAETSKLL
 1702- 1748 (79.19/52.79)	WVELRLLLNEQALID.KIENHDMSIVDAIRSSSPSSERATPSESEKVF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.89|      22|     102|    1887|    1908|       6
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 1887- 1908 (41.36/28.95)	FIELVIP..CID.QSSADS.HNTFAS
 1988- 2013 (27.52/16.41)	FIVRLLPiiCADgEPSARSmRNMLAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.10|      18|      54|     383|     402|       8
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  383-  402 (30.63/22.96)	PSPGG.....SDlvDNSRRAYTISA
  435-  457 (28.47/15.04)	PSDGGflskpSD..DAAKKNYTADA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.43|      18|     106|    1825|    1842|       9
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 1825- 1842 (34.34/23.21)	GWSYSGVDPVTNSGEKRK
 1933- 1950 (32.09/21.13)	GTASSGIEGPTNKINNRK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02826 with Med12 domain of Kingdom Viridiplantae
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