<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02825

Description Uncharacterized protein
SequenceMQRYHAPSCTSAVNNSAIGGASVRDTPRADSSSLPPNFSLNSRRQSQLAPYKLKCDKEHLNSRLGPPDFHPQTQNCPEETLTRENVQHGYKDTIDGLEDSKEISLTQVQAFTKPVVLKCRDAIRKCLRAINESRAQKRKAGQVYGVPLSGSLLSKPGVFPEQRPCNEDFRKKWIEGLSLQHKPLCSLADQVPLGYKKRPLIEVLIRNNVPLLKATWFIKVTYLNQVRPGSAISSGAPDKTQLSRTELWTKDVIDYLQYLLDEFFSRNNSHSTQHGRDRLPQIHYAGSLQHRSDLAPAVIDGEEPSLHFKWWYVVRLLQWHHAEGLVLPSLIIDWVLNQLQEKDLLEILQLLLPIIYGVLETIILCQTYVRNLVGVAIRFIREPSPGGSDLVDNSRRAYTISALVEMLRYLIQATPDTFVALDCFPLPTCVLSHTPSDGGFLSKPSDDAAKKNYTADAYAVRGKGFDSQYQSLSFNHVVSTVEKRADNLAKGATAGYPSQSVAKAVQTLDKALLQGDVIDAYKHIFNDLYDGAVGEGWVAEVSPSLRSSLKWLQTVNLSLICSVFFLCEWATCDYRDFRTAPPSDVKFTGSKDFSQIYLAIQLLKLKMKELQKKLKKGRASRKNTSQQNSYSSKDLLGDTHEAKSNGKGLNGRRRNFSDIFDSPGPLHDIIVCWIDQHEGHKGEGSKRLQLFMLELIRSGIFYPQAYVRQLLVSGIIDTNGPMADLNRRKRHQRILKQLPGQFMLNALEEARIAEGSELLEAINVYSNERLLVLQELFFDSYNNTNNSHALAKKLNCRPTLGRDVDSQVSCDKRRTVQASKTFRREVGLEELKASISVLLQFPSSSFCSADSGEDESQGSIKRSIGSTHSKMDSVEGTPGCEDCKRVKRLKLSEDETSCLKVYSPIPSDDDDTWWVRKGPKNLEGSKVDPLLKSTKQASRGRQKPVRKTQSLAQLAAARIEDSQGASTSHVCDNKISCPHHRTEVENLKPVDGIRTTHHADIISIGRGLKQLRFVEKRVVTIWLLSVVRQLVEESEKSVPKASQYGRPFVAADEKSPLRWKLGEDELSAILYLLDVSCDSASAVKFLLWLLPKAISNPSPAIHGGRNILMVPRNVENYACEVGEAYLLSSLRRYENILIAADLVPEALSATMRHVASFMATNGRITGSGALVFACYLLRRYGSIASVIEWEKNFKETCDKRLLSELESGRTEGEFGFPHGVPAGTEDPDDYCRQRINVGRLSRAGVSMRDMVQRRIDDVLHYILGKERKHFAANTQRSPATEKGDDDYQVAQQIIMGLMDCFRQTGGAFQEGDPGLVSSAVSAIVSNVGPTLAKIPDFTSGSTYSNYQPPMNYLNFAKRLLHIHLICLCLLKEALGERKSQAFEIALATEAFSALAVAFAPAKSSRGQLLSPDSLDSHANISNDNSHSSAKATLGRTTKMAAAVSALVIGAIIHGVISLERMVSVLRLKEGLDVVQFVRSTKTSSNGNARSVGAFKVDNSVEVYVHLFRLFVGNCRTVCDGLVLELLGEQSVLALSRMQRLLPINLVFPPAYAIFAFMIWKPFILNSNTARSEDIQQLYQSLTVAIGDAIKHRPFRDVCMRDTRGFYDIVAADTTDAEFAAMLELNGLDMHLKSMAFVPLRARLFLNAIIDCKMPNSAFTQDDGNRVSGHSESKALRAETSKLLDKLVCALDTIQPAKFHWQWVELRLLLNEQALIDKIENHDMSIVDAIRSSSPSSERATPSESEKVFIEIILTRLLVRPDAAPLFSEVVHLFGRSLEDSMLMQAKWFLGGLDVLLGRKTVRQRLSNIAENKNLSTKSQFWKPWGWSYSGVDPVTNSGEKRKSEVTSLEEGEVIEEGMESKGCVKGSTQVDIEGSGINQQHVTEKAFIELVIPCIDQSSADSHNTFASDLIKQFNTIEQQINSVTRGVSKQTGTASSGIEGPTNKINNRKGIRGGSPGLAKRTPAPVESAPPPSPAALRASMSLREPSARSMRNMLASVILRLLGSRVVHEDVDLSSNLAQLKRDMELMPVVASTEMSGDSLFDRLLLVLHGLLSSCKPSWLKSKDAKDFSGFDREAVEGLQNELDSMQLPEMIRWRIQAAMPILFPSFHNTVSCQPPSVPIGALSLLQPSICVPGSYTGTINPSQRQVASARNANNMPGKSKSVLSQENDMEIDPWTLLEYGAGSGPSSSSTAAIGGSDNANLRASSWLKGAVRVRRTDPSYIGAVDDDS
Length2231
PositionKinase
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.286
Instability index48.04
Isoelectric point8.57
Molecular weight247005.80
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02825
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     122.79|      34|     553|    1063|    1100|       1
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 1063- 1096 (55.70/31.78)	EDELSAI....LYL..LD.VSC..DSASAVKF.LLWLLPKAISN
 1615- 1650 (48.45/25.98)	DAEFAAM....LELngLD.MHL..KSMAFVPL.RARLFLNAIID
 1669- 1702 (18.64/ 6.11)	HSESKALraetSKL..LDkLVCalDTIQPAKFhWQW........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     248.63|      81|     302|     845|     961|       2
---------------------------------------------------------------------------
  126-  215 (122.32/74.77)	CLRAINESRAQ...KRKAGQVYGvpLSGSLLSKPGVfpeqRPCNEDFRKKWIEGLS..LQ.HKPLCSLADQVpLGYKKRPliEVLIRNNV.PLLKAT
  847-  934 (126.31/149.18)	CSADSGEDESQgsiKRSIGSTHS..KMDSVEGTPGC....EDCKRVKRLKLSEDETscLKvYSPIPSDDDDT.WWVRKGP..KNLEGSKVdPLLKST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.09|      45|     554|    1439|    1485|       3
---------------------------------------------------------------------------
 1439- 1485 (64.08/55.39)	MAAAVSALVIGAIIHGVISLERmvSVLRLKEGLDVVQFVRSTKTSSN
 1996- 2040 (71.01/53.94)	LASVILRLLGSRVVHEDVDLSS..NLAQLKRDMELMPVVASTEMSGD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.26|      36|     556|      47|     123|       5
---------------------------------------------------------------------------
   76-  116 (55.46/88.48)	CPEETLTRENVQhgykdTIDGLEDSKE...IS....LTQVQAFTKPVV
  977- 1019 (53.80/13.29)	CPHHRTEVENLK.....PVDGIRTTHHadiISigrgLKQLRFVEKRVV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.10|      18|      52|     383|     402|       6
---------------------------------------------------------------------------
  383-  402 (30.63/24.87)	PSPGG.....SDlvDNSRRAYTISA
  435-  457 (28.47/16.25)	PSDGGflskpSD..DAAKKNYTADA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     430.12|     195|     631|     582|     802|       7
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  582-  733 (174.68/155.35)	......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PSDVKfTGSKDFSQiYLaiqllklkmkelQKKLKKGRASRKNTSQQNSYSSK..D....LLGD..THEAksngkgLNGRRRNFSDIFDSPGPL.HDIIVCWID...QHEGHKGEGSKRLQLFMLELIRSGIFYPQAYVRQlLVSGIIDTN..GPMADLNRRKR..HQR
  734-  802 (46.46/28.44)	ILKQLPGQFMLNALEEARIAEG.SELLEAINVYSNERLLVLQELFFDSYNN..TNNSHALAKklncrPTLGR......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1217- 1363 (169.15/106.68)	........................................................................dvdsqvscdkrrtvqasktfrrevgleelkasisvllqfpsssfcsadsgedesqgsikrsigsthskmdsvegtpgcedckrvkrlklsedetsclkvyspipsddddtwwvrkgpknlegskvdpllkstkqasrgrqkpvrktqslaqlaaariedsqgastshvcdnkiscphhrtevenlkpvdgirtthhadiisigrglkqlrfvekrvvtiwllsvvrqlveeseksvpkasqygrpfvaadeksplrwklgedelsailylldvscdsasavkfllwllpkaisnpspaihggrnilmvprnvenyacevgeayllsslrryeniliaadlvpealsatmrhvasfmatngritgsgalvfacyllrrygsiasvieweknfketcdkrllselesgrtegefgfPHGVP.AGTEDPDD.YC............RQRINVGRLSRAGVSMRDMVQRRidDvlhyILGKerKHFA......ANTQRSPATEKGDDDYQVaQQIIMGLMDcfrQTGGAFQEGDPGLVSSAVSAIVSNVGPTLAKIPD.FTSGSTYSNyqPPMNYLNFAKRllHIH
 1369- 1435 (39.83/12.69)	LLKEALGERKSQAFEIALATEAfSALAVAFAPAKSSRGQLLSPDSLDSHANisNDNSHSSAK.....ATLGR......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.00|      30|    1690|     403|     432|       8
---------------------------------------------------------------------------
  403-  432 (56.39/46.51)	LVEMLRYLIQAT.....PDTFVALDCFP..LPTCVLS
 2090- 2126 (47.61/37.76)	LPEMIRWRIQAAmpilfPSFHNTVSCQPpsVPIGALS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.05|      23|    1690|     491|     514|       9
---------------------------------------------------------------------------
  491-  514 (34.43/27.16)	GATAGyPSQSVAKAVQTLDKALLQ
 2183- 2205 (40.62/26.47)	GAGSG.PSSSSTAAIGGSDNANLR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02825 with Med12 domain of Kingdom Viridiplantae
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