<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02823

Description Uncharacterized protein
SequenceMNGNNLKPTSASEKPAMGRGDWRTQLRSDLRERIIVNKMFDTLKRHLRSSGEDKLNELRKTVEAFEEKTYNAASNQFDYVRRISLKLLQKETQSQNIVQNSGQCSNNLHNPGSQSMQSEQVHGEGLSHQNIPNDLKGKVNIYDLPGKDGPDVIFPKQWPPLPALYISEQTPTIRSTSVDCADLTMAQQNNHSNMHQQQQQQQQQLMAQQNNLSNMHQQQLGPQSNISGLQQQQQQLVGTQSGNSSMQTNQQSLHMLSQPKVALQQTQQTAPNLLPTQGQTSQQPQQQQQLMSQMQSQPTQLRQQLGLQQHPNQVQQNMQQRLQASGQTSSSLLQSQNLIDQQQQLYQSQRAVPETSSISLDSTAQTGHSNGGDWQEEVYQKIKAMKETYFPELNMMHEKISATLLQVEHDSLPQQTKSARLEKMKLFKTMLERILSFLTISRAAIVPAFKDKLSSYEDQIGKFIIANRPRKLVSALQQGQLLPTHMHSMQQPQPESNQTQSHDNQMNPLFPSMMRPAQMPQLKKQMPRLQQLQLLQMLQQRGMHRVDELQSPAKIKTNELSHLHQIDIDSGVLQENLPSNQLPGYEQASSEYHAPDTAGIGVPPIMSIPPLLPGFKEVNDTSGNALTTDFGKPDIAEQPHDLKVNMAKPKSLSATVVTMVDEAVTSVGEDLAAMRKQGLHARNFFAQTGMSGAEKMRCYLSALVILALLIFFIFNLNHQY
Length720
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.04
Grand average of hydropathy-0.737
Instability index60.83
Isoelectric point8.47
Molecular weight81108.75
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02823
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.69|      24|      30|     327|     355|       1
---------------------------------------------------------------------------
  216-  237 (35.86/ 9.56)	HQQQLGPQS.....NISG..LQ.........................QQQQQLV
  265-  291 (33.75/ 8.59)	QTQQTAPNLlptqgQTSQ...QPQ........................QQQQLM
  477-  523 (19.08/ 6.54)	QQGQLLP.T.....HMH.smQQPQpesnqtqshdnqmnplfpsmmrpAQMPQLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.98|      23|     137|     183|     209|       2
---------------------------------------------------------------------------
  183-  205 (46.09/20.48)	LTM..AQQNNHSNMHQQQQQQQQQL
  308-  322 (23.00/ 6.83)	......QQ..HPN..QVQQNMQQRL
  358-  382 (31.89/10.05)	ISLdsTAQTGHSNGGDWQEEVYQKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.01|      16|     137|     447|     469|       3
---------------------------------------------------------------------------
  427-  442 (26.91/16.12)	FKTML....ERILSFLTISR
  449-  468 (22.10/22.98)	FKDKLssyeDQIGKFIIANR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.51|      19|     138|     100|     119|       5
---------------------------------------------------------------------------
  101-  119 (36.20/17.39)	SGQCSNNLHN...PGSQSMQSE
  570-  591 (28.31/ 8.56)	SGVLQENLPSnqlPGYEQASSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.19|      13|      29|     597|     609|       9
---------------------------------------------------------------------------
  597-  609 (24.67/14.99)	TAGIGVPPIMSIP
  627-  639 (24.52/14.86)	TTDFGKPDIAEQP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02823 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HQIDIDSGVLQENLPSNQLPGYEQASSEYHAPDTAGI
2) LQQGQLLPTHMHSMQQPQPESNQTQSHDNQMNPLFPSMMRPAQMPQLKKQM
3) SQNIVQNSGQCSNNLHNPGSQSMQSEQVHGEGLSHQNIPNDLKGKVNIYDLPG
4) STSVDCADLTMAQQNNHSNMHQQQQQQQQQLMAQQNNLSNMHQQQLGPQSNISGLQQQQQQLVGTQSGNSSMQTNQQSLHMLSQPKVALQQTQQTAPNLLPTQGQTSQQPQQQQQLMSQMQSQPTQLRQQLGLQQHPNQVQQNMQQRLQASGQTSSSLLQ
564
476
94
175
600
526
146
334










Molecular Recognition Features






MoRF SequenceStartStop




NANANA