<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02819

Description Uncharacterized protein
SequenceMQPPPLPVPQGALSSSASFSFTPNPQLVQNAQIQPSKSDTLATGTQAMAASSPSTVSQSGPLPVHNSSEFTMNASTTPSFAPVTSRMPTTPPFPMSSGSSGTSGTPGHPGSIPSIQMITASAAVDSPSSAVPGPGAPVSLNPAVQQQVYPPYTSLPSMVSSPQGYWMQHPPMGGFPRPPFVPYPTVYPGPFPSTSSGMPLPAPSSDSQPPGVRPLGMSPFAPSAAALANQSLAILTGFPPQGIDNRKLVHDVTTKVESAGNEQSDVWTAHKTDTGVVYYYNALTGESTYEKPAGFKGEPDQVTVQPTPVSVEQLAGTDWALVTTNDGKKYYYNSKTKISSWQIPNEVTELRKKQDSEVSKENAVSVPNIDVVAEKGSTPISLSAPAVNTGGRDAMPLRTSVVPGSSSALDLIKKKLQDPGVPSSSPVPVVPVTATHELNGSRAVDVKGLQSESNKDKLKDANGDGSISDSSSDSEDADSGPSKEECIMQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDHDTNYQTFKRKWGSDPRFEALDRKDRELLLNERVLLLKRAAEEKARAIRAAAASSFKSMLKEKGDINVNSRWSRVKDSLRDDPRYKCVKHEDREVLFNEYISELKAIEEKAERKDKVKKEEEKLKERERELRKRKEREEQEMERVRLKVRRKEAVASFQALLVETIKDPQASWTESKPKLEKDPQGRAANPDLDSSDMEKLFREHIKMLFERCVNDFRALLAEVITQDATAQETEGGKTALNSWSTAKRLLKPDPRYNKMPRKEREALWRRYAEDMLRKQKSALDQEEEKHTDVKGRSSGGDFGRYSSGTRRTHERR
Length886
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.768
Instability index54.79
Isoelectric point8.76
Molecular weight97732.64
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02819
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     247.45|      53|      58|       2|      54|       1
---------------------------------------------------------------------------
    2-   54 (90.80/39.02)	QPP..PLP....VPQGA...LSSSASFSFTPNPQLVQNAQIQPSKSDTLAT.GTQAMAASSPS
   58-  114 (77.19/32.09)	QSG..PLP....VHNSSeftMNASTTPSFAPVTSRMPTTPPFPMSSGSSGTsGTPGHPGSIPS
  150-  204 (79.46/33.24)	.PPytSLPsmvsSPQGY...WMQHPPMGGFPRPPFVPYPTVYPGPFPSTSS.G...MPLPAPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     463.01|      65|      66|     550|     614|       2
---------------------------------------------------------------------------
  487-  547 (69.47/36.31)	....IMQFKEMLKE..RGVAPFSK.WEKELPKIVFD.PRFKA....IpSHSARRSLFEHYV.K..TRAEEerkEKR
  550-  614 (104.46/58.16)	QKAAIEGFKQLLDEASEDIDHDTN.YQTFKRKWGSD.PRFEA....L.DRKDRELLLNERV.LLLKRAAE...EKA
  618-  680 (94.83/52.15)	RAAAASSFKSMLKE.KGDINVNSR.WSRVKDSLRDD.PRYKC....V.KHEDREVLFNEYI.SELK.AIE...EKA
  686-  719 (36.83/15.92)	VKKEEEKLKE.........................R.ER.EL....R.KRKEREEQEMERV.RLKVR.........
  721-  785 (65.73/33.97)	.KEAVASFQALLVETIK..DPQAS.WTESKPKLEKD.PQGRAanpdL.DSSDMEKLFREHIkMLFERCVN...D..
  792-  844 (63.07/32.31)	..EVIT..QDATAQETEGGKTALNsWSTAKRLLKPD.PRYNK....M.PRKEREAL........WRRYAE...D..
  846-  884 (28.63/10.80)	....LRKQKSALDQ..EEEKH.TD.VK..GRSSGGDfGRYSS....G.TRRTHE......................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     252.50|      61|      61|     317|     377|       3
---------------------------------------------------------------------------
  267-  318 (86.50/44.83)	WTA..HKTDTGVVYYYNALTGESTYEKP...AGF...KGE.PDQVTVQPTPVSVEQL.......AGTD
  319-  379 (101.36/53.77)	WAL..VTTNDGKKYYYNSKTKISSWQIPNEVTEL...RKK.QDSEVSKENAVSVPNIDVVAE.KGSTP
  380-  441 (64.64/31.69)	ISLsaPAVNTGGRDAMPLRTSV....VPGSSSALdliKKKlQDPGVPSSSPVPVVPVTATHElNGS..
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02819 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EKGSTPISLSAPAVNTGGRDAMPLRTSVVP
2) FPSTSSGMPLPAPSSDSQPPGVRPLGMSPF
3) ITQDATAQETEGGKTALNSWSTAKRLLKPDPRYNKMPRKER
4) KQKSALDQEEEKHTDVKGRSSGGDFGRYSSGTRRTHERR
5) LIKKKLQDPGVPSSSPVPVVPVTATHELNGSRAVDVKGLQSESNKDKLKDANGDGSISDSSSDSEDADSGPSKEECIMQF
6) MQPPPLPVPQGALSSSASFSFTPNPQLVQNAQIQPSKSDTLATGTQAMAASSPSTVSQSGPLPVHNSSEFTMNASTTPSFAPVTSRMPTTPPFPMSSGSSGTSGTPGHPGSIPSIQMITASAAVDSPSSAVPGPGAPVSLNPAVQQQ
374
191
794
848
411
1
403
220
834
886
490
147










Molecular Recognition Features






MoRF SequenceStartStop




1) ALDLIKKKLQ
2) ALWRRYAE
3) FGRYSS
408
836
872
417
843
877