<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02819

Description Uncharacterized protein
SequenceMQPPPLPVPQGALSSSASFSFTPNPQLVQNAQIQPSKSDTLATGTQAMAASSPSTVSQSGPLPVHNSSEFTMNASTTPSFAPVTSRMPTTPPFPMSSGSSGTSGTPGHPGSIPSIQMITASAAVDSPSSAVPGPGAPVSLNPAVQQQVYPPYTSLPSMVSSPQGYWMQHPPMGGFPRPPFVPYPTVYPGPFPSTSSGMPLPAPSSDSQPPGVRPLGMSPFAPSAAALANQSLAILTGFPPQGIDNRKLVHDVTTKVESAGNEQSDVWTAHKTDTGVVYYYNALTGESTYEKPAGFKGEPDQVTVQPTPVSVEQLAGTDWALVTTNDGKKYYYNSKTKISSWQIPNEVTELRKKQDSEVSKENAVSVPNIDVVAEKGSTPISLSAPAVNTGGRDAMPLRTSVVPGSSSALDLIKKKLQDPGVPSSSPVPVVPVTATHELNGSRAVDVKGLQSESNKDKLKDANGDGSISDSSSDSEDADSGPSKEECIMQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDHDTNYQTFKRKWGSDPRFEALDRKDRELLLNERVLLLKRAAEEKARAIRAAAASSFKSMLKEKGDINVNSRWSRVKDSLRDDPRYKCVKHEDREVLFNEYISELKAIEEKAERKDKVKKEEEKLKERERELRKRKEREEQEMERVRLKVRRKEAVASFQALLVETIKDPQASWTESKPKLEKDPQGRAANPDLDSSDMEKLFREHIKMLFERCVNDFRALLAEVITQDATAQETEGGKTALNSWSTAKRLLKPDPRYNKMPRKEREALWRRYAEDMLRKQKSALDQEEEKHTDVKGRSSGGDFGRYSSGTRRTHERR
Length886
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.768
Instability index54.79
Isoelectric point8.76
Molecular weight97732.64
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02819
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     247.45|      53|      58|       2|      54|       1
---------------------------------------------------------------------------
    2-   54 (90.80/39.02)	QPP..PLP....VPQGA...LSSSASFSFTPNPQLVQNAQIQPSKSDTLAT.GTQAMAASSPS
   58-  114 (77.19/32.09)	QSG..PLP....VHNSSeftMNASTTPSFAPVTSRMPTTPPFPMSSGSSGTsGTPGHPGSIPS
  150-  204 (79.46/33.24)	.PPytSLPsmvsSPQGY...WMQHPPMGGFPRPPFVPYPTVYPGPFPSTSS.G...MPLPAPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     463.01|      65|      66|     550|     614|       2
---------------------------------------------------------------------------
  487-  547 (69.47/36.31)	....IMQFKEMLKE..RGVAPFSK.WEKELPKIVFD.PRFKA....IpSHSARRSLFEHYV.K..TRAEEerkEKR
  550-  614 (104.46/58.16)	QKAAIEGFKQLLDEASEDIDHDTN.YQTFKRKWGSD.PRFEA....L.DRKDRELLLNERV.LLLKRAAE...EKA
  618-  680 (94.83/52.15)	RAAAASSFKSMLKE.KGDINVNSR.WSRVKDSLRDD.PRYKC....V.KHEDREVLFNEYI.SELK.AIE...EKA
  686-  719 (36.83/15.92)	VKKEEEKLKE.........................R.ER.EL....R.KRKEREEQEMERV.RLKVR.........
  721-  785 (65.73/33.97)	.KEAVASFQALLVETIK..DPQAS.WTESKPKLEKD.PQGRAanpdL.DSSDMEKLFREHIkMLFERCVN...D..
  792-  844 (63.07/32.31)	..EVIT..QDATAQETEGGKTALNsWSTAKRLLKPD.PRYNK....M.PRKEREAL........WRRYAE...D..
  846-  884 (28.63/10.80)	....LRKQKSALDQ..EEEKH.TD.VK..GRSSGGDfGRYSS....G.TRRTHE......................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     252.50|      61|      61|     317|     377|       3
---------------------------------------------------------------------------
  267-  318 (86.50/44.83)	WTA..HKTDTGVVYYYNALTGESTYEKP...AGF...KGE.PDQVTVQPTPVSVEQL.......AGTD
  319-  379 (101.36/53.77)	WAL..VTTNDGKKYYYNSKTKISSWQIPNEVTEL...RKK.QDSEVSKENAVSVPNIDVVAE.KGSTP
  380-  441 (64.64/31.69)	ISLsaPAVNTGGRDAMPLRTSV....VPGSSSALdliKKKlQDPGVPSSSPVPVVPVTATHElNGS..
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02819 with Med35 domain of Kingdom Viridiplantae
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