<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02817

Description Uncharacterized protein
SequenceMGPPRGRGGGGGFRGRGDGGRGRGGGGRGGDRGGSATKSRGGGRGGRGGGRGGGGRGGMKGGSKVIVEPHRHEGVFVAKGKEDALVTKNMVPGEAVYNEKRIAVQNEDGTKVEYRVWNPFRSKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDVVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVVGGYRMPKKQKAAA
Length303
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.398
Instability index32.83
Isoelectric point10.08
Molecular weight32005.11
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
methyltransferase activity	GO:0008168	IEA:UniProtKB-KW
RNA binding	GO:0003723	IEA:UniProtKB-KW

GO - Biological Process
methylation	GO:0032259	IEA:UniProtKB-KW
rRNA processing	GO:0006364	IEA:UniProtKB-KW









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02817
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.54|      23|      25|       6|      30|       1
---------------------------------------------------------------------------
    2-   23 (35.81/ 9.90)	..GPPRGRGGGGGfRGRGDGG........RGR
   25-   43 (31.50/ 6.93)	GGGRGGDRGGSAT.KSRGGG............
   44-   73 (40.23/ 7.59)	RGGRGGGRGGGG..RGGMKGGskvivephRHE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.18|      17|      17|     184|     200|       2
---------------------------------------------------------------------------
  184-  200 (29.95/19.49)	AKKR..TNVIPII.EDARHP
  201-  220 (20.24/11.22)	AKYRmlVGMVDVIfSDVAQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     205.89|      57|     159|      74|     131|       3
---------------------------------------------------------------------------
   74-  131 (92.35/71.09)	GVFVAKGKEDALVTKNMVPGEAVYNEKRIAVQNEDGTKVEYRVWNPFRSKlAAAVLGG
  147-  168 (18.43/ 6.94)	G..AASGTTVSHVSDVVGPNGVVY..................................
  238-  292 (95.11/68.56)	GHFVISIKANCI..DSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERD.HACVVGG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02817 with Med36 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MGPPRGRGGGGGFRGRGDGGRGRGGGGRGGDRGGSATKSRGGGRGGRGGGRGGGGRGGMKGGSKVIVEPHRHE
1
73










Molecular Recognition Features






MoRF SequenceStartStop




1) MGPPRGRGGGGGFRGRGDGGRGRGGGGRGGDRGGSATKSRGGGRGGRGG
1
49